BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332600

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G34860.1 | Symbols:  | Plant neutral invertase family protei...   241    8e-63


> AT4G34860.1 | Symbols:  | Plant neutral invertase family protein 
| chr4:16609746-16612907 REVERSE LENGTH=2330
Length=2330

 Score =  241 bits (130),  Expect = 8e-63
 Identities = 220/260 (85%), Gaps = 20/260 (8%)
 Strand=Plus/Plus

Query  358   TTTGCCTTT-GGTAATTGTATAGCCATGTTGTCTTCCTTGGCT--A-CT---C-CT-G--  406
             |||| |||| |||||||||||||| || |||||||||||||||  | ||   |  | |  
Sbjct  1606  TTTG-CTTTGGGTAATTGTATAGCAATATTGTCTTCCTTGGCTACACCTGAACAGTCGAC  1664

Query  407   A--AATTATCGATCTCATAGAATCTCGCTTGGAAGAGTTGGTTGGAGAAATGCCACTGAA  464
             |  |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1665  AGCAATTATGGATCTGATAGAATCTCGCTGGGAAGAGTTGGTTGGAGAAATGCCACTGAA  1724

Query  465   AGTTTGCTATCCCGCAATAGGAAGCCATGAATGGAGAATAGTAACTGGTTGTGACCCTAA  524
             ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct  1725  AGTTTGCTATCCCGCCATAGAAAGCCATGAATGGAGAATAGTAACTGGTTGTGACCCCAA  1784

Query  525   AAACACTCGATGGAGCTACCACAAT--A--ATT-TA-CTAATGCTTATATGGCTACTGAC  578
             ||||||||| |||||||||||||||  |  ||  |  | | ||||  ||||||| |||||
Sbjct  1785  AAACACTCGGTGGAGCTACCACAATGGAGGATCGTGGCCAGTGCTGCTATGGCTTCTGAC  1844

Query  579   AGCTACTTGTATTAAAACTG  598
              ||| ||||||| |||||||
Sbjct  1845  GGCTGCTTGTATCAAAACTG  1864


 Score =  200 bits (108),  Expect = 1e-50
 Identities = 172/203 (85%), Gaps = 3/203 (1%)
 Strand=Plus/Plus

Query  51    TGAATGCGAGAAGAGTATACAGCTCATACTAAGCATGTGCCTGTCTGAGGGATTTGATAT  110
             ||||||| ||||| |||| | ||| ||||| ||| |||| ||||||||||||||||||| 
Sbjct  1155  TGAATGCCAGAAGGGTATTCGGCTGATACTTAGCCTGTGTCTGTCTGAGGGATTTGATAC  1214

Query  111   CTTACATACTCTTTTATGCGATGATGGTTGTTGTTTGATTGATCATAGTACGGGAGTTTA  170
             ||| |  ||||| ||||| | ||||||||| ||| ||||||||| ||| | |||||||||
Sbjct  1215  CTTCCCCACTCTCTTATGTGCTGATGGTTGCTGTATGATTGATCGTAGGATGGGAGTTTA  1274

Query  171   TGGCTATCTAATAGAGATTCAAGCCCTTTTCTTTATGGCCTTAAGGTGTGCCGTGCTACT  230
             ||| || |  |||||||||||||||||||||||||||||||||||||||||| |||| | 
Sbjct  1275  TGGTTACCCGATAGAGATTCAAGCCCTTTTCTTTATGGCCTTAAGGTGTGCCTTGCT-C-  1332

Query  231   ACTGCTTAAAGAAGATGGAGAAG  253
              ||||||||| | || |||||||
Sbjct  1333  -CTGCTTAAACATGACGGAGAAG  1354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31597278463


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5