BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332601
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63830.1 | Symbols: | HIT-type Zinc finger family protein |... 1831 0.0
> AT5G63830.1 | Symbols: | HIT-type Zinc finger family protein
| chr5:25543550-25544802 REVERSE LENGTH=1253
Length=1253
Score = 1831 bits (991), Expect = 0.0
Identities = 1148/1224 (94%), Gaps = 9/1224 (1%)
Strand=Plus/Plus
Query 4 ATGCCGGAGAAGACGATTATTACGTCGGAGAGTTCAAATTCGTCTCCGTTAAACCCTTCA 63
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCCGGAGAAGACGATTATTTCGTCGGAGAGTTCAAATTCGTCTCCGTTAAACCCTTCT 60
Query 64 TCTTCGCGGATTATCTGCCATGTGTGTAATAAGCAGTTCTCGCAGTACACTTGTCCTCGC 123
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTACGCGGATTATCTGCCATGTATGTAATAAGCAGTTCTCGCAGTACACTTGTCCTCGC 120
Query 124 TGCAACTTCCGGTACTGCTCTCTTCCTTGTTACAAATCTCACAGTGTCCAATGTACTGAA 183
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCAACTTCCGGTACTGTTCCCTTCCTTGTTACAAATCTCACAGTGTCCAATGTACTGAA 180
Query 184 TCTTTCATGAGAGAGAATGTAAATGATGAGTTGAAGCAAGTTCGATCTGATGATCAAACG 243
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 TCATTCATGAGAGATAATGTAAACGATGAATTGAAGCAAGTTCGATCTGATGATCAAACG 240
Query 244 AAAACGAAGATGCTCGAAATTTTGAAAAGGTTTCACGAAGAAGAGGAAGAAGATGATGGA 303
|||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 AAAAGGAAGATGCTCGAAATTTTGAAAAGGTTTCACGAAGAAGAAGAGGAAGATGATGGG 300
Query 304 GGAATTGATAGCATCACGGATGATGAAGGTTCGATCTTACCGGAGGAGATTATTGAGAAG 363
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||
Sbjct 301 GGAATTGATAGCATCACGGATGATGAAGGTTTGAGCTTACCGGAGGAGATTATTCAGAAG 360
Query 364 ATAATGAACGGAGATGAAGTAAGTCTTGATGATTTGAGCTTAGAAGAGAGAAAAGGGTTC 423
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 361 ATAATGAACGGAGATGAAGTGAGTCTTGATGATTTGAGCTTAGAAGAGAGAAAAGGATTC 420
Query 424 CAAAGAGCCTTAGCTTCTGGAGAATTAAGCAAAATGATTCAACCATGGGATCCTTGGTGG 483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 CAAAGAGCCTTAGCTTCTGGAGAATTAAGCAAAATGATCCAACCATGGGATCCTTGGTGG 480
Query 484 TTACGTGCTTCAGCTCGAACGATCAATCTTGGACTCGGAGGTACACAACTCGTTCAATGT 543
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 481 TTACTTGCTTCAGCTCGAACGATCAATCTTGGACTCGGAGGTACACAACTTGTTCAATGC 540
Query 544 GTTgaagaagaagaagaagaagCCATTGTTGTGAGTGAAGTTCCACGAGGGCCTGATACA 603
|||||||| ||||||| || | ||| |||||||||||| | ||||||||||||||||||
Sbjct 541 GTTGAAGACGAAGAAG-AG-A-CCACAGTTGTGAGTGAAATCCCACGAGGGCCTGATACA 597
Query 604 CCTCTGATCTCACTAAGCAAGCTTAGCTCAACGAATCCATCTCCTCTCTTACCAATCCAT 663
||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 598 CCTTTGATCTCACTAAGCAAGCTTACCTCCACGAATCCATCTCCTCTCTTACCAATCCAT 657
Query 664 TTGATTGATATCGTATATAGCTATTGTTTTACTCTCCGTATCTATAATGGAGAGTGGCAA 723
|||||||| || | |||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 658 TTGATTGACATTGCATATAGTTATTGCTTTACGCTCCGTATCTATAATGGAGAGTGGCAA 717
Query 724 TCTAATTCG-TTAGGTGCAGCAACAATGGTGTTAACTGTTTCATCAGTTTTGGGTCAGAA 782
||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 718 TCTGATTCGCTT-GGTGCAGCAACAATGGTGTTGACTGTTTCATCAGTTTTGGGTCACAA 776
Query 783 TGCACAACTTGAGACCATTAAGGAAGTGTTGGCGTTTTGCTTGGAACAGACATGCTCTTC 842
|| ||||| |||||||| |||||||||||| | ||||||||||||||||||||||||||
Sbjct 777 TGGACAACCAGAGACCATAAAGGAAGTGTTGTCCTTTTGCTTGGAACAGACATGCTCTTC 836
Query 843 TGCTTATAAGAACCTTGGCGGCGGTTTGAAGTTCGGATTGAATCTGGTCGATGATGTGAT 902
|||||||| |||||||| || ||| |||||||||||||||||||||| |||||||||||
Sbjct 837 AGCTTATAAAAACCTTGGTGGTGGTCTGAAGTTCGGATTGAATCTGGTGGATGATGTGAT 896
Query 903 TTGTTTGCTTTCTCTTGGCTCTGGAGCTATGGTATGTCTGCTCTGTGATCTCCAAAGGTT 962
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 897 TTGTTTTCTTTCTCTTGGCTCTGGAGCTATGGTATGTCTGCTCGGTGATCTCCAAAGGTT 956
Query 963 GATTCTTGGTGCAATAAAGGAAGTAAAATCATCATCAGGGCGTGATCTGAAGAAGAAACT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GATTCTTGGTGCAATAAAGGAAGTAAAATCATCATCAGGGCGTGATCTGAAGAAGAAACT 1016
Query 1023 TAAGCTTGCAGAAAGGAAAGTGTTCTTCATGATGTGTTGGGTCAATGAGCAGAGTTCTGA 1082
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1017 AAAGCTTGCAGAGAGGAAAGTGTTCTACATGATGTGTTGGGTCAATGAGCAGAATTCTGA 1076
Query 1083 AGTGTGGCAAGCTCTGGAATCATCAGTAAGGGCAGAGAAGAACTCGGTGGTTGAGCTCAA 1142
||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1077 AGTATGGGAAGCTCTGGAACCATCTGTAAGGGCAGAGAAGAACTCGGTGGTTGAGCTCAA 1136
Query 1143 CGATTGCAAAGGGTTTCC-GAATATGAAGAA-AATAGATCAATTCCAAAAAGGCGGTGGC 1200
||||| || ||||||||| ||| |||||||| || ||||||||| | |||||| ||||||
Sbjct 1137 CGATTACAGAGGGTTTCCAGAA-ATGAAGAAGAA-AGATCAATTTCGAAAAGGTGGTGGC 1194
Query 1201 GTGGTGATTGAGGAGATAGAATGA 1224
||||||||||||||||||||||||
Sbjct 1195 GTGGTGATTGAGGAGATAGAATGA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5