BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332615
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63970.1 | Symbols: | Copine (Calcium-dependent phospholipi... 1698 0.0
AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:24201... 167 2e-40
> AT5G63970.1 | Symbols: | Copine (Calcium-dependent phospholipid-binding
protein) family | chr5:25606771-25609247 REVERSE
LENGTH=1570
Length=1570
Score = 1698 bits (919), Expect = 0.0
Identities = 989/1023 (97%), Gaps = 4/1023 (0%)
Strand=Plus/Plus
Query 1 ATGAACAGGAGCAATCAACGTAATCAGCAACCTTCATATATTGCTGATCATTTCAGCAGT 60
||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 232 ATGAACATGAGCAATAAACGTAATCAGCAACCTTCGTATATTGCTGATCATTTCAGCAGT 291
Query 61 TTGGATCAGGTGATAACTTCTCTGAGAGAAGCTGGACTTGAATCTTCAAATCTGATTCTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTGGATCAGGTGATAACTTCTCTGAGAGAAGCTGGACTTGAATCTTCAAATCTGATTCTA 351
Query 121 GGAATTGACTTTACCAAGAGCAATGAGTGGACAGGGAGATATTCATTCAACAGAAAAAGC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 352 GGAATTGACTTTACCAAGAGCAATGAGTGGACAGGGAGATATTCATTCAATAGAAAAAGC 411
Query 181 CTTCATGCCATTGGTAAAAGACAGAATCCATATGAGCAAGCAATATCGATAATTGGTCGT 240
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 412 CTTCATGCCATTGGTAAAAGACAGAATCCATATGAGAAAGCAATATCGATTATTGGTCGT 471
Query 241 ACTTTGTCTCCCTTTGATGAAGATGATCTTATACCTTGTTTCGGTTTTGGCGATGTAACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ACTTTGTCTCCCTTTGATGAAGATGATCTTATACCTTGTTTCGGTTTTGGCGATGTAACA 531
Query 301 ACACGAGATCAATATGTTTTCAGCTTTTATCCCGAGAACAAAAGCTGCGACGGATTGGAA 360
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 ACGCGAGATCAATATGTATTCAGCTTTTATCCCGAGAACAAAAGCTGCGACGGATTGGAA 591
Query 361 AACGCAGTTAAAAGATATAGAGAGATTGTCCCACATTTGAAGTTGTCCGGTCCTACCTCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 AACGCAGTTAAAAGATATAGAGAGATTGTCCCACATTTGAAGTTGTCCGGTCCTACCTCG 651
Query 421 TTCGCACCGGTTATTGATGCTGCCATTAACATAGTTGAGCAGAACAATATGCAATACCAT 480
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 652 TTTGCACCGGTTATTGATGCTGCCATCAACATAGTTGAGCAGAACAATATGCAATACCAT 711
Query 481 GTTCTCGTCATTATTGCAGATGGTCAGGTCACAAGAAATCCAGATGTGCCGCTTGGTCGA 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 712 GTTCTCGTCATTATCGCAGATGGTCAGGTCACAAGAAATCCAGATGTGCCGCTTGGTCGA 771
Query 541 CTTAGTCCACAGGAAGAAGCTACTATGAACTCGATAATGGCAGCTAGCCATTACCCATTG 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 CTTAGTCCACAGGAAGAAGCTACTATGAACTCGATAATGGCAGCGAGCCATTACCCATTG 831
Query 601 TCGATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TCGATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGAC 891
Query 661 AATATTCCTCACCGTGAATTCGATAACTTCCAGTTTGTGAACTTCACAAAGATAATGTCA 720
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 892 AATATTCCTCACCGTGAATTCGATAACTTCCAGTTTGTAAACTTCACGAAGATAATGTCA 951
Query 721 GAGCATAAAGATGCGGCTAAAAAGGAGGCTGCTTTTGCGCTCGCAGCTCTCATGGAGATC 780
||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 952 GAGCACAAAGATGCGGCTAAGAAGGAGGCTGCTTTCGCACTCGCAGCTCTCATGGAGATC 1011
Query 781 CCTTTTCAATACAAGGCCACATTAAGTCTCAATAGAAAACCAGTTCGCAGTTCCCATCTG 840
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1012 CCTTTTCAATACAAGGCTACATTAAGTCTCAATAGAAAACCAGTGCGCAGTTCCCATCAG 1071
Query 841 CACCACAAGCCACTCCCTCCACCACCTGAGGTTATAGAGCGTGACAATGCTGTTAGATCA 900
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1072 CACCACAAGCCACTCCCGCCACCACCAGAGGTTATAGAGCGTGACAATGCTGTTAGATCG 1131
Query 901 GTGCCAAATCCGATGACAGAAACTGCAGAGAAAAGTGACAGAAT-GCTTCCTGTT-ACAG 958
|||||||||| ||||||||||||||||||||||||||||||| | ||| ||| | ||||
Sbjct 1132 GTGCCAAATCAGATGACAGAAACTGCAGAGAAAAGTGACAGACTCGCT-CCT-TCCACAG 1189
Query 959 TGCCGGTATGCCCAATTTGCTTGACGAATCCTAAGGACATGGCCTTTAGCTGCGGTCACA 1018
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1190 TGCCGGTATGCCCGATTTGCTTGACGAATCCAAAGGACATGGCTTTTAGCTGCGGTCACA 1249
Query 1019 CGA 1021
|||
Sbjct 1250 CGA 1252
Score = 147 bits (79), Expect = 3e-34
Identities = 85/88 (97%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1063 GACATGCAAGGAATGTGGAGTTGTTGTCACAACATGCCCACTATGCAGACAACCTATAAC 1122
||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1251 GACATGCAAGGAATGCGGAGTTGTTATCACAACATGCCCACTATGCAGACAACCAATAAC 1310
Query 1123 AACAAGGATAAGGCTGTACACTTGACTC 1150
||||||||||||||||||||||||||||
Sbjct 1311 AACAAGGATAAGGCTGTACACTTGACTC 1338
> AT3G01650.1 | Symbols: RGLG1 | RING domain ligase1 | chr3:242011-245268
FORWARD LENGTH=1785
Length=1785
Score = 167 bits (90), Expect = 2e-40
Identities = 524/723 (72%), Gaps = 72/723 (10%)
Strand=Plus/Plus
Query 97 CTTGAATCTTCAAATCTGATTC-TAGGAATTGACTTT-ACCAAGAGCAATGAGTGGACA- 153
||||||||||| ||||| | || | || ||||| ||| |||||||||||||| ||||||
Sbjct 563 CTTGAATCTTCTAATCT-AATCGTTGGTATTGA-TTTCACCAAGAGCAATGAATGGACAG 620
Query 154 GGGAGATATTCATTCAACAGAAAAAGCCTT-CATGCCA-TTG-GTAAAAGACAGAATCCA 210
||| | | || ||||| || ||||| ||| ||| || ||| | || | | |||||||
Sbjct 621 GGGCCA-AGTCCTTCAATAGGAAAAG-CTTGCAT--CACTTGAGCAATACCCCGAATCCA 676
Query 211 TATGAGCAAGCAA-TATCGATAATTGGTCGTA-CTTTGTCTC-CCTTTGATGAAGATGAT 267
|| |||||||||| || | || ||||| | | ||| | | | ||||||| || ||| |
Sbjct 677 TACGAGCAAGCAATTA-CTATCATTGGAAGAACCTTAG-C-CGCCTTTGACGAGGAT-AA 732
Query 268 CTT-ATACCTTGTT-TCGGTTTTGGCGATGTAACAACACGA-GATCAATATGT-TTTCAG 323
||| || ||||||| | |||||||| || | | |||| | | |||||| | || ||| ||
Sbjct 733 CTTAATTCCTTGTTAT-GGTTTTGGAGACGCATCAACTC-ATGATCAAGACGTGTTT-AG 789
Query 324 CTTT-TATCCCGA-GAACAAAAGCTGCGACGGATTGGA-AAACGCAGTT-AAAAGATATA 379
||| ||||| || | | | | ||| | ||||| || || | | || | ||||
Sbjct 790 -TTTCTATCCAGAGGGA-AGATTCTGTAATGGATTTGAGGAA-GTA-TTGGCTCGTTATA 845
Query 380 GAGAGATTGTCCCACA-TTTGAAG-TTGTCCGGTCCTACCTCGTTCGCACCGGTTATTGA 437
|||| ||||| || || || ||| | | | || || || || || || ||| | |||||
Sbjct 846 GAGAAATTGTACCTCAGCTT-AAGCTCG-CAGGACCAACTTCTTTTGCCCCGATCATTGA 903
Query 438 TGCTGCCATTAACA-TAGTTGAGCAGAACAATATG-CAATACCATGT-TCTCGTCATTAT 494
|| || | ||| | |||||||||| | | | ||||| ||||| | | || |||||
Sbjct 904 -AATGGCAATGACAGTGGTTGAGCAGAGTAGT-GGCCAATATCATGTGT-TAGTGATTAT 960
Query 495 TGCAGATGGTCAGGTCACAAGAAAT-CCAGATGTGCCG--CTTGGTCGACTTAGTCCAC- 550
|| ||||| ||||||||||||| | | || | ||| | || || || ||||| |
Sbjct 961 AGCTGATGGCCAGGTCACAAGAAGTGTC-GA--TACCGAACACGGGCGGCTAAGTCCGCA 1017
Query 551 AGGA-AGAAG-CTACT--ATG-AACTCGAT-AATGGC-AGCTAGCCATTACCCATTGTCG 603
|| | ||||| | | | ||| || | | | || || || || || || || |||||
Sbjct 1018 AGAACAGAAGAC-AGTAGATGCAA-TTG-TGAA-AGCAAG-TA-CCCTT--CCTTTGTCA 1069
Query 604 ATAGTCTTGGTTGGAGTAGGAGATGGACCATGGGACACAATGAAACAATTCGATGACAAT 663
|||||||| ||||| || || |||||||||||||||| ||| | |||| ||||| ||
Sbjct 1070 ATAGTCTTAGTTGGGGTCGGGGATGGACCATGGGACATGATGCAGGAATTTGATGATAAC 1129
Query 664 ATTCCT-CACCGTGAATTCGATAACTTCCAGTTTGTGAACTTCACAAAGATAATGTCAGA 722
|| ||| | ||| | |||||||||||||||||||||||||||||| |||| |||||| |
Sbjct 1130 ATACCTGC-CCGAGCTTTCGATAACTTCCAGTTTGTGAACTTCACAGAGATCATGTCAAA 1188
Query 723 GCATAAAGATGCGG-CTAAAAAGGAGGCTGCTTTTGCGCTCG-CAGCTCTCATGGAGATC 780
| | ||||| | | || |||||| | | |||||||| | | |||||||||||||||
Sbjct 1189 GAACAAAGAC-CAGTCTCGGAAGGAGACAGAGTTTGCGCT-GTCTGCTCTCATGGAGATC 1246
Query 781 CCT 783
|||
Sbjct 1247 CCT 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5