BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332664
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64470.2 | Symbols: | Plant protein of unknown function (DU... 1951 0.0
> AT5G64470.2 | Symbols: | Plant protein of unknown function (DUF828)
| chr5:25776025-25777963 FORWARD LENGTH=1472
Length=1472
Score = 1951 bits (1056), Expect = 0.0
Identities = 1172/1228 (95%), Gaps = 8/1228 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTTGGGATCCAGACGAATCTACACGACGATGCCGTCGAAGCTCCGA---tcttct 57
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2 ATGGAGTTGGGATCCAGACGAATCTACACGACGATGCCGTCGAAGCTCCGATCTTCTTCT 61
Query 58 tcacttcttccacgtcttctgctcctttctctcttattactcctcttctattccttaatt 117
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 62 TCACTTCTTCCACGTATTCTGCTCCTTTCTCTCTTATTACTCCTTTTCTATTCCTTAA-- 119
Query 118 cttctccGCCGCCCGATCACATCAAACCTCGTCTCTCCTCCGCCGTGCGATCTCTTCTCC 177
|||||||||| ||||| || |||||| | | ||||||||||||||||||||||||||||
Sbjct 120 -TTCTCCGCCGTCCGATTACTTCAAACATTGCCTCTCCTCCGCCGTGCGATCTCTTCTCC 178
Query 178 GGCAAATGGGTCTTCAATCCAGAAACTCCGAAACCGTTGTACGACGAGACTTGTCCTTTC 237
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GGCAGATGGGTTTTCAATCCAGAAACTCCGAAACCGTTGTACGACGAGACTTGTCCTTTC 238
Query 238 CACAGAAACGCTTGGAATTGTTTACGGAACAAGCGAGATAACATGGATGTTATCAATTCA 297
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 239 CACAGAAACGCTTGGAATTGCTTACGGAACAAGCGAGATAATATGGATGTTATCAATTCA 298
Query 298 TGGAGATGGGTTCCCAGTGGCTGTGGATTGAGTCGCATTGACCCGGCTCGGTTTCTAGGG 357
|||||||||| |||| ||| |||||||||||||| ||||||||| | ||||||||||||
Sbjct 299 TGGAGATGGGAGCCCAATGGATGTGGATTGAGTCGAATTGACCCGACCCGGTTTCTAGGG 358
Query 358 ATGATGAGGAACAAGAATGTTGGGTTTGTTGGGGATTCTCTGAATGAGAATTTCTTGGTT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 ATGATGAGGAACAAGAATGTTGGGTTTGTTGGGGATTCTCTGAATGAGAATTTCTTGGTT 418
Query 418 TCGTTCTTGTGTATACTTAGAGTGGCTGATCCAAGTGCTGTGAAGTGGaaaaagaaaaaa 477
||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 419 TCGTTCTTGTGTATACTTAGAGTGGCTGATCCAAGTGCTATTAAGTGGAAGAAGAAAAAA 478
Query 478 GCTTGGCGTGGAGCTTACTTCCCTAAGTTCAATGTCACTGTTGCTTATCATAGAGCTGTG 537
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 479 GCTTGGCGTGGAGCTTACTTCCCTAAGTTCAATGTCACTGTTGCTTATCACAGAGCTGTT 538
Query 538 CTTCTCGCTAAATATCAGTGGCAGCCGAAG-TCTTCTGCTGAAGCTAATCAAGACGGAGA 596
|||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 539 CTTCTCGCTAAATATCAGTGGCAGGCG-AGATCTTCTGCTGAAGCTAATCAAGACGGAGT 597
Query 597 GAAAGGAACGTATCGAGTTGATGTTGATGTTCCTGCAAATGAGTGGATCAATGTCACTAG 656
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 598 GAAAGGAACTTATCGAGTTGATGTTGATGTTCCTGCAAATGAGTGGATCAACGTCACTAG 657
Query 657 CTTCTACGATGTTCTCGTTTTTAACTCTGGCCATTGGTGGGGTTACGATAAGTTTCCTAA 716
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTTCTATGATGTTCTCATATTTAACTCTGGCCATTGGTGGGGTTACGATAAGTTTCCTAA 717
Query 717 AGAGTCACCTCTTGTCTTCTATCGAAAGGGAAAGCCGATAAACCCTCCCCTTGATATATT 776
|||| |||||||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 718 AGAGACACCTCTTGTCTTCTACCGAAAGGGAAAGCCGATAAATCCTCCTCTTGATATATT 777
Query 777 ACAAGGATTTGAAGTAGTTCTTCAACATATGGTTTCTTATATCCAAAGAGAAGTCCCAGC 836
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 778 ACCAGGATTTGAACTAGTTCTTCAAAATATGGTTTCTTATATCCAAAGAGAAGTCCCTGC 837
Query 837 GAAGACCCTTAAGTTCTGGCGTTTGCAATCACCTAGGCATTTCTATGGCGGTGATTGGAA 896
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 838 GAAGACCCTTAAGTTCTGGCGTTTGCAATCACCAAGGCATTTCTATGGTGGTGATTGGAA 897
Query 897 CCAGAACGGAAGTTGTTTGCTCGATAAGCCACTCGAAGAAAACCAGCTTGACTTGTGGTT 956
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 CCAGAATGGAAGTTGTTTGCTCGATAAGCCACTCGAAGAAAACCAGCTTGACTTGTGGTT 957
Query 957 TGATCCCAGGAACAATGGAGTGAACAAAGAAGCAAGAAAGATTAACCAAATCATCAAGAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TGATCCCAGGAACAATGGAGTGAACAAAGAAGCAAGAAAGATTAACCAAATCATCAAGAA 1017
Query 1017 TGAGTTGCAAACGACAAAGATCAAATTACTTGATCTGACCCATCTAAGCGAATTCAGAGC 1076
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1018 TGAGTTGCAAACGACAAAGATCAAGTTACTTGATCTGACCCATCTAAGCGAATTCAGAGC 1077
Query 1077 AGACGCCCACCCAGCTATCTGGTTAGGGAAGCAGGACGCGGTGGCAATATGGGGACAAGA 1136
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 AGATGCCCACCCAGCGATCTGGTTAGGGAAGCAGGACGCGGTGGCAATATGGGGACAAGA 1137
Query 1137 CTGTATGCATTGGTGCCTACCCGGTGTTCCCGACACATGGGTCGATATCTTAGCGGAACT 1196
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1138 CTGTATGCATTGGTGCCTACCCGGTGTTCCTGACACATGGGTCGATATATTAGCGGAACT 1197
Query 1197 CATTCTCACTAACTTGAAAACAGAGTGA 1224
||||||||||||||| ||||||||||||
Sbjct 1198 CATTCTCACTAACTTAAAAACAGAGTGA 1225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5