BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332687

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64685.1 | Symbols:  | transposable element gene | chr5:2585...   309    9e-84


> AT5G64685.1 | Symbols:  | transposable element gene | chr5:25855347-25857377 
REVERSE LENGTH=2031
Length=2031

 Score =  309 bits (167),  Expect = 9e-84
 Identities = 191/203 (94%), Gaps = 0/203 (0%)
 Strand=Plus/Plus

Query  86    GCTGTGGCGCGAGTTTTGTGATTGAGATTGTCTCAGAACAGTTTGAGGGGAAGAGATTGC  145
             |||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct  1634  GCTGTGGCGCGAGTTTTGTGGTTGAGATTATCTCGGAACAGTTTGAGGGGAAGAGATTGC  1693

Query  146   TCGAGAGGCATCGCATTGTGAACGCTGCTCTTGAAGAAGAAATGAAAGAAATCCATGCTC  205
             |||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1694  TCGAGAGGCACCGTATTGTGAACGCTGCTCTTGAAGAAGAGATGAAAGAAATCCATGCTC  1753

Query  206   TCTCTATAAAGAAAGCTCAAACTCCACAACAATGGAAGCCAGTATCACAAGACTCTGCAA  265
             |||| |||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  1754  TCTCGATAACGAAAGCTCAAACTCCGCAACAATGGAAGCCAATATCACAAGACTCTGCAA  1813

Query  266   CAACTCCATCCACAGAAGCTTGA  288
             |||||||| ||||||| ||||||
Sbjct  1814  CAACTCCAACCACAGAGGCTTGA  1836



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5