BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332703
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64820.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 588 2e-167
> AT5G64820.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G16850.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25913999-25914523
REVERSE LENGTH=438
Length=438
Score = 588 bits (318), Expect = 2e-167
Identities = 409/451 (91%), Gaps = 14/451 (3%)
Strand=Plus/Plus
Query 1 ATGAAT-GACTCAAGAAGAATCAGATTTGGTTTCTCATTCTTCTTCGTCATCATCATCTT 59
|||||| || ||||||||||| ||||| || ||||| ||||| | | ||||||||||
Sbjct 1 ATGAATGGA-TCAAGAAGAATAAGATTCGGCGTCTCAGTCTTC-T-G-CATCATCATC-- 54
Query 60 AATCTCTGGGGCGATTTTAGCGGTATCTGCAGATGGAGCGGAAAGTGATGGTGTCGCGAA 119
|| | | ||| | | |||||||||||||||||||||||||||| ||| ||||||
Sbjct 55 -AT-T-T----TGATATCCGGGGTATCTGCAGATGGAGCGGAAAGTGATAGTGCCGCGAA 107
Query 120 AAAAGAAGAGAATCCGTCGATTGTAAAGACCATATGTGGGATTTTTGGCAAGAAATTTCC 179
|||||||||||||| ||||||||||||| |||| |||||||||||||||| || |||||
Sbjct 108 GAAAGAAGAGAATCCATCGATTGTAAAGATCATAAGTGGGATTTTTGGCAACAAGTTTCC 167
Query 180 TCCGAGTTCATGGGAATTGATTCAAGGTGCAATGCAGAAGATCCAAATGAAGCTCTACCC 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 168 TCCGAGTTCATGGGAATTGATTCAAGGTGCAATGCAGAAGATCCAGATGAAGCTTTACCC 227
Query 240 TCCAAATCTAGATTTCAGAAGCAACAGCGACAAAAACAACAGAGAGGAAGAAGATAAAGC 299
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 228 TCCAAATCTAGATTTCAGAAGCAACAGCGACAAAAGCAACATAGAGGAAGAAGATAAAGC 287
Query 300 AGAGAAAGTGAAAGAAGCAGCGACGAGGAGTCTCGAAGTAAGCAAAGAAGCTATTGAAGA 359
||||||||||| ||||||||| || |||||||| ||||||||||||||||| ||||||||
Sbjct 288 AGAGAAAGTGAGAGAAGCAGCTACAAGGAGTCTAGAAGTAAGCAAAGAAGCCATTGAAGA 347
Query 360 GTCTGCAAAACTAGCAGGAGATGTTGTAGGTGAAGTAGTTCAGAAAACAGCTGAGAAAGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 GTCTGCAAAACTAGCAGGAGATGTTGTAGGTGAAGTAGTTCAGAAAACAGCTGAGAAAGT 407
Query 420 TACCAAACAAACCTCACATGATGAAATGTAA 450
||| |||||||||||||||||||||||||||
Sbjct 408 TACTAAACAAACCTCACATGATGAAATGTAA 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5