BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg332722 Length=609 Score E Sequences producing significant alignments: (Bits) Value AT5G65030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 870 0.0 > AT5G65030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:25975697-25976305 REVERSE LENGTH=609 Length=609 Score = 870 bits (471), Expect = 0.0 Identities = 565/611 (92%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 1 ATGGGTGTCATGGAGAAGAAACTTCGTTCACTAAAATGCGAAGTGAGAATAGTAGAAGCA 60 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 ATGGGTGTTATGGAGAAGAAACTTCGTTCACTAAAATGCCAAGTGAGAATAGTAGAAGCA 60 Query 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA 120 Query 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGATCTCTTCGAAATCAGATCAACTC 180 |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| Sbjct 121 GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGCTCTCTTCGAAATCAGACCAACTC 180 Query 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTCTCCAAGAATTG 240 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 181 ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTGTCAAAGAATTG 240 Query 241 AAGCAACAGAGAGTTGTTTTCGAGCTACGGAGGAAGAAAACACCGTCGTTTCTTAGGAAG 300 |||||||||||||| ||||| || |||||||||||||||| | || ||||||||||||| Sbjct 241 AAGCAACAGAGAGTCGTTTTTGAACTACGGAGGAAGAAAATATCGACGTTTCTTAGGAAA 300 Query 301 TCATC-AAGATCTGAGGTTGTGGGGAGAGGAGAGGTTTCATGGGAATCGGTTTTCGAGTC 359 ||||| || |||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 301 TCATCTAA-ATCTGAGGTTGTTGGGAGAGGAGAGGTTTCTTGGGAATCGGTTTTCGAGTC 359 Query 360 GCCGGGCATGGAGATTGGGAGATTTGTGGTGATGGGTGTATCGATAAACCGGGTTTCAGG 419 ||| ||||||||||||| |||| ||||||||||||||| ||| | ||| |||||| || Sbjct 360 GCCAGGCATGGAGATTGAGAGACTTGTGGTGATGGGTGAATCCAAAAATTGGGTTTT-GG 418 Query 420 A-GATGAAAAACCTATGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAGACGG 478 | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | || Sbjct 419 AAGATGAAAGACCTTTGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAAATGG 478 Query 479 AGAAGATTTTTATCAAGAAAGACAAGAAAACAGAGAACCATTGTTGTGTGTGTAGTAGTA 538 ||||||| | |||||||| ||||||||||||||||| | |||||||||||||||||||| Sbjct 479 AGAAGATGCTGATCAAGAATGACAAGAAAACAGAGAAGCTTTGTTGTGTGTGTAGTAGTA 538 Query 539 GAGATTGTGGAAGCTGCAATTGCTTCGATTACGAAGCTTTTGCTTTAGCTTGTGCTTTAG 598 ||||||| |||||||| | |||||| ||||| || ||||||||||||| ||||||||||| Sbjct 539 GAGATTGCGGAAGCTGTAGTTGCTTAGATTATGAGGCTTTTGCTTTAGTTTGTGCTTTAG 598 Query 599 ATTGCATTTAA 609 |||| |||||| Sbjct 599 ATTGTATTTAA 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29336741848 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5