BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332722

Length=609
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65030.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   870    0.0  


> AT5G65030.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G10210.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:25975697-25976305 REVERSE LENGTH=609
Length=609

 Score =  870 bits (471),  Expect = 0.0
 Identities = 565/611 (92%), Gaps = 4/611 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTGTCATGGAGAAGAAACTTCGTTCACTAAAATGCGAAGTGAGAATAGTAGAAGCA  60
            |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGGTGTTATGGAGAAGAAACTTCGTTCACTAAAATGCCAAGTGAGAATAGTAGAAGCA  60

Query  61   AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGAAACGTAGAGATCAAGTCACAAGCTAGTACTCTGTTCGTTAGATTCTATCTCTCTGCA  120

Query  121  GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGATCTCTTCGAAATCAGATCAACTC  180
            |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  121  GGACACAACAGAAAGATCGAAGTAAACACGAGAGAGCTCTCTTCGAAATCAGACCAACTC  180

Query  181  ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTCTCCAAGAATTG  240
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct  181  ATGTGGGATCAATCTTTTGGTCTGGAGTGTCAAGGGGACGAAGCAGCTGTCAAAGAATTG  240

Query  241  AAGCAACAGAGAGTTGTTTTCGAGCTACGGAGGAAGAAAACACCGTCGTTTCTTAGGAAG  300
            |||||||||||||| ||||| || |||||||||||||||| | || ||||||||||||| 
Sbjct  241  AAGCAACAGAGAGTCGTTTTTGAACTACGGAGGAAGAAAATATCGACGTTTCTTAGGAAA  300

Query  301  TCATC-AAGATCTGAGGTTGTGGGGAGAGGAGAGGTTTCATGGGAATCGGTTTTCGAGTC  359
            ||||| || |||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  301  TCATCTAA-ATCTGAGGTTGTTGGGAGAGGAGAGGTTTCTTGGGAATCGGTTTTCGAGTC  359

Query  360  GCCGGGCATGGAGATTGGGAGATTTGTGGTGATGGGTGTATCGATAAACCGGGTTTCAGG  419
            ||| ||||||||||||| |||| ||||||||||||||| ||| | |||  ||||||  ||
Sbjct  360  GCCAGGCATGGAGATTGAGAGACTTGTGGTGATGGGTGAATCCAAAAATTGGGTTTT-GG  418

Query  420  A-GATGAAAAACCTATGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAGACGG  478
            | ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||
Sbjct  419  AAGATGAAAGACCTTTGTTGTTGAAGATAGCTTTAAAGGTCCAAGCTTTAGAAGAAATGG  478

Query  479  AGAAGATTTTTATCAAGAAAGACAAGAAAACAGAGAACCATTGTTGTGTGTGTAGTAGTA  538
            |||||||  | |||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct  479  AGAAGATGCTGATCAAGAATGACAAGAAAACAGAGAAGCTTTGTTGTGTGTGTAGTAGTA  538

Query  539  GAGATTGTGGAAGCTGCAATTGCTTCGATTACGAAGCTTTTGCTTTAGCTTGTGCTTTAG  598
            ||||||| |||||||| | |||||| ||||| || ||||||||||||| |||||||||||
Sbjct  539  GAGATTGCGGAAGCTGTAGTTGCTTAGATTATGAGGCTTTTGCTTTAGTTTGTGCTTTAG  598

Query  599  ATTGCATTTAA  609
            |||| ||||||
Sbjct  599  ATTGTATTTAA  609



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29336741848


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5