BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332725
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65090.1 | Symbols: MRH3, BST1, DER4 | DNAse I-like superfam... 2682 0.0
> AT5G65090.1 | Symbols: MRH3, BST1, DER4 | DNAse I-like superfamily
protein | chr5:26004017-26006851 FORWARD LENGTH=1914
Length=1914
Score = 2682 bits (1452), Expect = 0.0
Identities = 1545/1590 (97%), Gaps = 6/1590 (0%)
Strand=Plus/Plus
Query 1 ATGAACAACAGAGGAGATAATGATGACC-A-A-GACCACTATCGAGTTTTCAATGATTTT 57
|||||||| |||||| |||||||||||| | | |||||||| |||||||||||||||||
Sbjct 130 ATGAACAATAGAGGAAATAATGATGACCTAGACCACCACTATGGAGTTTTCAATGATTTT 189
Query 58 GAGCGACGAATGGCTTCTCGAAAGAAATCGATTCTTGACAACACTTCTCCAATGATTTGG 117
|||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 190 GAGCGACGAATGACGTCTCGAAAGAAATCGGTTCTTGACAACACTTCTCCAATGATTTGG 249
Query 118 AAGACTGTTTCTGAGAGAAAGTCAAGTCCTGGAATTGAAGGCTTGAATCTGTCGAGTTTC 177
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 250 AAGACTGTTTCTGAGAGAAAGTCAAGTCCTGGAATTGAAGGCTTGAATCTATCGAGTTTT 309
Query 178 GATAGGCCTATGGCACCAACAACAGAGATTCGTGAACTCAGGGTGTTTCTAGCTACGTGG 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 310 GATAGGCCTATGGCACCAACTACAGAGATTCGTGAACTCAGGGTGTTTCTAGCTACGTGG 369
Query 238 AACGTAGGAGGAAGAACACCAAACAATGATCTTAACCTCGAAGACTTCTTACTCGTTGAA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 AACGTAGGAGGAAGAACACCAAACAATGATCTTAACCTCGAAGACTTCTTACTCGTTGAA 429
Query 298 GGCACAGCAGATTTATATATCTGTGGGTTTCAAGAGATTGTTCCTCTAAGTGCAGGAAAC 357
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 430 GGCACAGCAGATTTATATATCTGTGGCTTTCAAGAGATTGTTCCTCTAAGTGCAGGAAAC 489
Query 358 GTATTAGTAGTTGAGGATAACGAGCCTGCAGCTAAATGGTTAGCTCTAATAAGTCAAGCT 417
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 490 GTATTAGTAGTTGAGGATAACGAGCCAGCAGCTAAGTGGTTAGCTCTAATAAGTCAAGCT 549
Query 418 TTAAACAAACCGAAACAAGAATCTGTTTATTCGAATGCAGCTTTCTCTGCTTCAAGAACA 477
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 550 TTAAACAAACCGAAACAGGAATCTGTTTATTCGAATGCAGCTTACTCTGCTTCAAGAACA 609
Query 478 ACTACTTGTAGTAGTAGTAGTTGTGGTAGTGAAGAATCAAGAACACCAAGTAGTCTAAGT 537
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 610 ACTACTTGTAGTAGTAGTAGTTGTGGTAGTGAAGAATCAAGAGCACCAAGTAGTCTAAGT 669
Query 538 TTCTTTCAAAGACCAAATCTTAAAGTTTTGAGCAGAAACTATAGGGTTGATTCAAGTCTT 597
|||||||||||||| |||||||| || ||||||||||| ||||| || ||||||||||||
Sbjct 670 TTCTTTCAAAGACCGAATCTTAAGGTCTTGAGCAGAAATTATAGAGTCGATTCAAGTCTT 729
Query 598 TTAAAGACTTGTAATTGTCCGGTTATCGATACTTCGGTTGGTTGGGAAGCGAGGAGATCG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 TTAAAGACTTGTAATTGTCCGGTTATCGATACTTCGGTTGGTTGGGAAGCGAGGAGATCG 789
Query 658 AAAAGGTTTAGTGATCCTAGTACAGATAGTAGTAACAATGTGGAGCCTGAGAACTTTAGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AAAAGGTTTAGTGATCCTAGTACAGATAGTAGTAACAATGTGGAGCCTGAGAACTTTAGG 849
Query 718 GTTCATGAGAATTTCTTATTTGATGATGTTCCTGCGACTACGAAGATGCCAGGACAAATG 777
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 850 GTTCATGAGAATTTCTTGTTTGATGATGTTCCTGCGACTACCAAGATGCCAGGACAAATG 909
Query 778 AGTTATCGATTGATCGCGAGTAAACAGATGGTTGGTTTGTTTTTGTCTGTTTGGGCTAGA 837
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 910 AGTTATCGATTGATTGCGAGTAAACAAATGGTTGGTTTGTTTTTGTCTGTTTGGGCTAGA 969
Query 838 AGAGAGTTGATTCCACATATATCTCATCTTAGACTTGACTCTGTTGGGAGAGGAATCATG 897
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 970 AGAGAGTTGATTCCACATATATCTCATCTTAGACTTGATTCTGTTGGGAGAGGAATCATG 1029
Query 898 GGTCGCTTAGGGAACAAGGGATGTATTGCTATAAGCATGTCATTGCACCAAACGAGCTTT 957
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1030 GGTCGCTTAGGGAACAAGGGATGCATTGCTATAAGCATGTCATTGCACCAAACGAGCTTT 1089
Query 958 TGCTTTGTGTGTAGCCATTTGGCTTCTGGTGAGAAAGAAGGTGATGAGCTGAGAAGAAAC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TGCTTTGTGTGTAGCCATTTGGCTTCTGGTGAGAAAGAAGGTGATGAGCTGAGAAGAAAC 1149
Query 1018 GCAGACGTAGCTGAGATTCTGAAACATACTCAATTCCCTAAACTCACCAAGAACCCTAAT 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1150 GCAGACGTAGCTGAGATTCTGAAACATACTCAATTCCCTAAACTCACCAAGAACCCTAAT 1209
Query 1078 TGTCACGCACCCGAAAGAATCGTTGATCATGACCGAGTGCTTTGGCTTGGAGATTTGAAT 1137
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1210 TGTCACGCACCCGAAAGAATCATTGATCATGACCGAGTGCTTTGGCTAGGAGATTTGAAT 1269
Query 1138 TACAGAGTTGCATTAACCTATGAAGAGACGAGAGTATTACTAGAAGACAATGATTGGGAC 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TACAGAGTTGCATTAACCTATGAAGAGACGAGAGTATTACTAGAAGACAATGATTGGGAC 1329
Query 1198 ACTCTTCTTGAGAGAGACCAGCTAAACATGGAAAGAGGAGCAGGAAGAGTCTTTTCAGGA 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 ACTCTTCTTGAGAGAGACCAGCTAAACATGGAAAGAGGAGCAGGAAGAGTCTTTTCAGGA 1389
Query 1258 TTTCAAGAAGGTCAAATCTTCTTTGCTCCAACCTATAAGTACTCTCAGAACTCAGATGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 TTTCAAGAAGGTCAAATCTTCTTTGCTCCAACCTATAAGTACTCTCAGAACTCAGATGCT 1449
Query 1318 TACGCCGGAGAAATGACCAAGTCCAAGAAAAAACGCCGTACTCCTGCTTGGTGTGATCGG 1377
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1450 TACGCCGGAGAAATGACCAAGTCCAAGAAAAAACGCCGTACTCCGGCTTGGTGTGATAGG 1509
Query 1378 ATTCTATGGAGAGGAGAAGGAATAGAACAGCTTTCATATATTCGAGGCGAATCGCGGTTT 1437
|||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1510 ATTCTATGGAAAGGAGAAGGAATAGAACAGCTTTCATATATTCGCGGCGAATCGCGGTTT 1569
Query 1438 TCAGATCATAGACCGGTTTGCGCCATCTTTGCAGTAGAAGTTGATGTGAAGAGTCTGAAC 1497
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1570 TCAGATCATAGACCAGTTTGCGCGATCTTTGCAGTAGAAGTTGATGTGAAGAGTCTAAAC 1629
Query 1498 AAAGGTAGATTCAGGAAAGGTTATTCTTGTGCGGCTGCAAGACTGGTTGAAGAT-TG-C- 1554
||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |
Sbjct 1630 AAAGGTAGATTCAGGAAAGGTTATTCTTGTGCGGCTGTAAGATTGGTTGAAGATGTGGCT 1689
Query 1555 ATTCCACAAAGGCATAGTTTTTATGACTAA 1584
||||||||||||||||||||||||||||||
Sbjct 1690 ATTCCACAAAGGCATAGTTTTTATGACTAA 1719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78212449110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5