BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332733
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | c... 1380 0.0
> AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 |
chr5:26034422-26035927 REVERSE LENGTH=1028
Length=1028
Score = 1380 bits (747), Expect = 0.0
Identities = 871/932 (93%), Gaps = 4/932 (0%)
Strand=Plus/Plus
Query 1 ATGGCGACTGTCTTGCGGTTTTTAGGGCGTAGAATCTGCAATCCAGCGGCGGAGAAAGTA 60
||| || ||||||||||||| || ||||| |||||||| ||||||||||||||||||||
Sbjct 6 ATGTCGTCTGTCTTGCGGTTGTTGGGGCGGAGAATCTGTAATCCAGCGGCGGAGAAAGTG 65
Query 61 CGTTTGAGCAGTAGCTTAAGCGAG-GGAGGTGATTTTCCGGTCTTAAAAGGCCAGAAAGC 119
||||||||||||||| |||||| | || || |||||||| ||||||| || || |||||
Sbjct 66 CGTTTGAGCAGTAGCCTAAGCG-GTGGTGGAGATTTTCCAATCTTAAATGGACATAAAGC 124
Query 120 GGCTCAAGACTTATCCAAAGATACTCTAAAGTCCCATGAAATAACAAAAGAGAAAGAAGG 179
|||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||||||
Sbjct 125 GGCTCAAGACTTATCCAAAGATACTCTAAAATCCCAAGACATAACGAAAGAGAAAGAAGG 184
Query 180 CCAACACAAAGAAGCTAAGAAGGAGTTCAAGATTTACAGATGGAATCCTGACAAACCTAA 239
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 185 CCAACACAAAGAAGTTAAGAAGGAGTTCAAGATTTATAGATGGAATCCTGACAAGCCTAA 244
Query 240 CTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATGGTTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 CTCTAAACCATTTCTTCAATCTTTCTTCGTTGATCTTTCCTCTTGTGGTCCCATGGTTTT 304
Query 300 GGACGTACTGCAGAAGATAAAAGCAGAGGAAGATGCGAGTTTGAGTTACAGAAGATCATG 359
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 305 GGACGTGCTGCAGAAGATAAAAGCAGAGGATGATGCCAGTTTGAGTTACAGAAGATCATG 364
Query 360 TAGAGAAGGAATATGTGGATCTTGCTCGATGAACATCGACGGTACTAATACTGTCGCATG 419
||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 365 TAGAGAAGGGATATGTGGATCTTGTTCAATGAACATTGACGGTACTAACACTGTCGCATG 424
Query 420 TCTTAAACCCATAAACCCCAACTCGTCGAAGCCCACCATAATTACTCCATTGCCTCACAT 479
|||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 425 TCTTAAACCCATAAACCCAAACACGTCAAAGCCCACCATAATTACTCCATTGCCTCACAT 484
Query 480 GTACGTCATCAAAGACCTAGTCGTCGACCTCACTAATTTTTATCAACAATACAAAGCAAT 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 485 GTACGTCATCAAAGACCTAGTCGTCGACCTCACTAATTTTTACCAACAATACAAATCAAT 544
Query 540 GGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGTGAACACCGACAATCACC 599
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 545 GGAGCCATGGTTAAAGACGAGGAAGCCTCCAAAAGACGGACGCGAACACCGGCAATCACC 604
Query 600 AAAAGACCGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTACCAC 659
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 AAAAGACAGGAAGAAACTAGACGGGCTATACGAATGCATATTGTGCGCGTGTTGTACCAC 664
Query 660 ATCATGTCCTTCTTATTGGTGGAACCCTGAGGAGTTTCCAGGACCCGCGGCTTTACTACA 719
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 665 ATCATGTCCTTCTTATTGGTGGAACCCCGAGGAGTTTCCAGGACCTGCGGCTTTACTACA 724
Query 720 AGCGTATCGTTGGATCAGTGATAGCCGTGATGAGTTTGGAGAAGAGAGACTTCAGGCGAT 779
|||||| ||||||||||| |||||||| ||||| | |||||||||| || ||||| ||
Sbjct 725 AGCGTACCGTTGGATCAGCGATAGCCGCGATGAATACAGAGAAGAGAGGCTACAGGCAAT 784
Query 780 AACTGAGAATCAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCACTTG 839
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 AACTGAGAGTGAAACCAAAGTATATAGATGCAGAGCAATCAAGAACTGTACGGCCACTTG 844
Query 840 TCCTAAAGGACTTAATCCAGCTAGTGCTATTTTGAAAATGAAGTCTAAGCATTTTCTCTC 899
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 845 TCCTAAAGGACTTAACCCAGCTAGTGCCATTTTGAAAATGAAGTCTAAGCATTTGCTCTC 904
Query 900 CGATCCGGTT-GTGAGAACCGAGAGTCTCTAG 930
||||||| || |||||||| |||||| |||||
Sbjct 905 CGATCCG-TTAGTGAGAACAGAGAGTGTCTAG 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5