BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332756
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65400.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1166 0.0
> AT5G65400.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:26131426-26133259 FORWARD LENGTH=978
Length=978
Score = 1166 bits (631), Expect = 0.0
Identities = 721/764 (94%), Gaps = 7/764 (1%)
Strand=Plus/Plus
Query 1 ATGTTGGGACACTCATATCCTTGTTTCCAAACGGGACTACGGTTTAAGGTAACGGCGATG 60
||||| ||| |||| ||||||||||||||||||||| ||||| |||| | |||||||||
Sbjct 23 ATGTTAGGATACTCCTATCCTTGTTTCCAAACGGGATTACGG-TTAACG--ACGGCGATG 79
Query 61 GCGCCGGAGAATT-ACCGGAAACCGAAGAACCCTCGAATTTTATGCCTTCATGGATTCAG 119
|||||||| |||| ||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 80 GCGCCGGA-AATTCACCTGAAACCGAAGAACCCTAGAATTTTATGCCTTCATGGATTCAG 138
Query 120 AACCAGTGGTCTGATTCTCCAAGCGGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 179
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 139 AACTAGTGGTCGGATTCTCCAAGCCGGTATAGGTAAATGGCCGGACACAATTCTCCGAGA 198
Query 180 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGAAAATCTGACGTCGAGCG 239
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 199 TCTCGACCTCGATTTCCTTGACGCTCCTTTTCCGGCCACCGGGAAATCGGACGTCGAGCG 258
Query 240 TTTCTTTGATCCGCCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 299
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTTCTTTGACCCACCGTATTACGAGTGGTACCAGGCTAACAAGGGGTTTAAGGAATATAG 318
Query 300 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GAATTTTGAAGAGTGTTTGGCTTATATAGAGGACTACATGATAAAGAATGGACCTTTTGA 378
Query 360 TGGTCTTCTTGGTTTCTCACAGGGAGCTTTTCTAACTGCGGCTATTCCGGGAATGCAAGA 419
||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 379 TGGTCTTCTTGGTTTTTCTCAGGGAGCTTTTCTAACTGCAGCTATTCCTGGAATGCAAGA 438
Query 420 ACAGGGAACTGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTGGTTATAATATCTGGAGC 479
||||||| | |||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 439 ACAGGGATCGGCTCTAACTAAGGTGCCAAAAGTCAAGTTTTTAGTTATCATTTCTGGAGC 498
Query 480 -AAAATTTCCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 538
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 GAAAATT-CCAGGGTTGATGTTTGGGGAGCCTAAAGCTGCTGTTAATGCATTCTCATCTC 557
Query 539 CAGTTCGTTGCCCGTCACTCCACTTCATAGGTGAAAGGGATTTCCTGAAGACAGAAGGTG 598
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 558 CAGTTCGTTGCCCATCACTCCACTTCATAGGTGAGAGGGATTTCCTGAAGATAGAAGGTG 617
Query 599 AAGTTCTTGTAGAATCATTTGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 658
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AAGTGCTTGTAGAATCATTCGTAGAGCCAGTGGTGATCCATCATTCAGGTGGACACATTA 677
Query 659 TACCGAAACTCGATACTAAAGCTGAGGAGAGAGTGTTAAGTTTCTTCCAGAGGATTAGGC 718
|||| ||||||||||||||||||||||||| | |||| |||||||||||||| |||||||
Sbjct 678 TACCAAAACTCGATACTAAAGCTGAGGAGACAATGTTGAGTTTCTTCCAGAGCATTAGGC 737
Query 719 AGATGCTTTCTGATGAACCAGCTCCTGTAAGAAGCTTGATGTGA 762
||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct 738 AGATGCTTTCTGATGAATCAGGTTCTGTAAGAAGCTTGATGTGA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5