BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332761
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |... 3247 0.0
AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 128 2e-28
> AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17
| chr5:26157863-26161096 FORWARD LENGTH=2196
Length=2196
Score = 3247 bits (1758), Expect = 0.0
Identities = 2072/2218 (93%), Gaps = 44/2218 (2%)
Strand=Plus/Plus
Query 1 ATGATGTTGGTTTTTCTTCTGATTCGTCGGCAATGGAGATCTGCTTCTGTGAGGAGAGAG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1 ATGATGTTGGTTTTTCTTCTGATTCGCCGGCAATGGAGATCTGCTTCTGTGAGAAGAGAA 60
Query 61 GAAGTTATTCGTCTCATTGCTTTAGCCACCGAAGAATCTTATCTGGCGGAGGAGGTTCGT 120
|| || |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||
Sbjct 61 GAGGTGATTCGTCTCATTGCTTTAGCCACCGAGGAATCTTATTTGGCGGAGGAAGTTCGT 120
Query 121 GCCTCCACTGTTGA-T-----------TCGGTTTCGGATGTTTATCGTTGCGCTGTTTGT 168
|| |||||||||| | |||||||| |||||||| ||||| || ||||||
Sbjct 121 CCCGCCACTGTTGATTACGGCGGAGACTCGGTTTCTGATGTTTACCGTTGTGCCGTTTGT 180
Query 169 CTCTACCCTACCACTACTCGTTGCTCTCAGTGCAAATCTGTTCGTTACTGTTCAAGCAAG 228
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTATACCCTACCACTACTCGTTGCTCTCAGTGCAAATCTGTTCGTTACTGTTCAAGCAAG 240
Query 229 TGTCAATTTCTTCATTGGCGACGAGGCCATAAAGAAGAATGTCGATCGCCAGATTACGAT 288
|||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |||
Sbjct 241 TGTCAAATTCTTCACTGGCGACGAGGTCATAAGGAAGAATGTCGATCGCCTGATTATGAT 300
Query 289 GAAGAAAAGGAGGAGTCTGTTAAATCTGATGATGATGCAAAAGAGTCGAATATGGATTTT 348
|||||||||||||||| |||| |||||||| ||||||| |||||||| ||| ||||||||
Sbjct 301 GAAGAAAAGGAGGAGTATGTTCAATCTGATTATGATGCTAAAGAGTCTAATGTGGATTTT 360
Query 349 CCGTCTCGTGGGACTGCGTTTGAATCATCAGCAGAAGTACCCTCAAATGTGTCTGTTGAT 408
|| |||||||||||||||| |||||||| | | | || |||||||||||||||
Sbjct 361 CCATCTCGTGGGACTGCGTATGAATCAT---C---A-T---CT--AATGTGTCTGTTGAT 408
Query 409 GTTGCCTGTGATATGTCTACAAGTAGGCCTAGTATTCATAAACTGCAAGCTAGATCTGAA 468
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 409 GTTGCCTGTGATATGTCTACAAGTAGGCCTAGTATTCATAAAGTGCAACCTAGATCTGAA 468
Query 469 GCTGTGGATTTCACTACTTCTTTTAACTTAAAGGATAATCTCTATGAGACCAGGCCACTT 528
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 469 GCTGTGGATTTCACTACTTCTTTAAACATAAAGGATAATCTCTATGAGACCAGGCCACTA 528
Query 529 AGTAGGAAGAAATCACGTAATCGTACAGACAAGGTTGAATCAGCGAGAAATTATTCCAAA 588
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 529 AGTAGGAAGAAATCACGTAATCGTACAGACAAGGTTGAGTCAGCCAGTAATTATTCCAAA 588
Query 589 GGAAAGACTGATGCAAAGCCGCGGAAACTTGGCAATCAAAATTCTCGTAAGTCAGGTGGT 648
||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |
Sbjct 589 GGAAAGACTGATGCAAAGCTGCGGAAACTTGGCAATCAAAATTCACGTAGGTCAGGTGAT 648
Query 649 TCGGCTGAA-ATGTCAATTACAGATCAATTTTTGTCAGTTGATGAGTATGAAGAAGAAAT 707
|||||| || ||||||||| ||||||||||||||||||||| | || ||||||||||||
Sbjct 649 TCGGCT-AATATGTCAATTTCAGATCAATTTTTGTCAGTTG--G-GTTTGAAGAAGAAAT 704
Query 708 AAATGCATTTGAACACGGAAGAATTACATCTGAACCATCTAGTGCTTCTGCTGCAATG-- 765
|||||| || |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 705 GAATGCACTTAAACATGAAAGAATTACATCTGAACCATCTAGTGCTTCTGCTGCAATGTC 764
Query 766 -TCATCTTCAACTGTTCTCCTACCTTCTAAAGCTAATAGTAAGCCAAAAGTGTCACAAGC 824
|| ||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 765 TTCGTCTTCAACTCTTCTCCTACCTTCAAAAGCTAACAGTAAGCCAAAAGTGTCACAAGC 824
Query 825 TTCAAGTAGTGGATTGAAAACATCGGTGCAGAAAGTTGTTCAGCATTTTAGACC-CCGAC 883
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 825 TTCAAGTAGTGGATTGAAAACATCGGTGCAGAAAGTTGTTCAGCATTTTAGACCTCC-AC 883
Query 884 AGTCGTC-AAAAATGTTTCAACCTTCCAGTTCTATTGATGAGATGAGCTTCTCATATGAG 942
||||||| ||||| || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 884 AGTCGTCCAAAAA-GTCTCAACCTTCCAGTTCTATTGATGAGATGAGCTTCTCGTATGAG 942
Query 943 TTGTTTGTGAAACTTTATTGTGATAAAGTAGAATTACAGCCATTTGGTCTTGTGAACTTA 1002
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 943 TTGTTTGTGAAACTTTATTGTGATAGAGTAGAATTACAGCCATTTGGCCTTGTGAACTTA 1002
Query 1003 GGAAACAGTTGCTATGCAAATTCTGTCCTTCAGTGCTTGGCATTCACTCGGCCACTTATA 1062
|| |||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1003 GGGAACAGTTGTTATGCAAATGCTGTCCTTCAGTGCTTGGCATTCACTCGGCCACTGATA 1062
Query 1063 TCATACCTTAGTAGGGGATTACACTCTAAAACATGTAGAAAGAAGAGTTGGTGTTTTGTT 1122
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TCATACCTTATTAGGGGATTACACTCTAAAACATGTAGAAAGAAGAGTTGGTGTTTTGTT 1122
Query 1123 TGTGAGTTTGAACATTTAATTTTAAAGGCAAGGGGAGGATAATCTCCT-TTATCCCCTAT 1181
|||||||||||||| |||||||||||||||||||||||| |||||||| || || |||||
Sbjct 1123 TGTGAGTTTGAACACTTAATTTTAAAGGCAAGGGGAGGAGAATCTCCTCTT-TCACCTAT 1181
Query 1182 CAAGATCTTATCAAAATTACAAAAGATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGA 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CAAGATCTTATCAAAATTACAAAAGATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGA 1241
Query 1242 CGCACACGAGTTTTTAAGGTGTGCTGTTGAGACAATGCAATCTGTTTTTCTCAAAGAGGC 1301
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1242 CGCGCACGAGTTTTTAAGGTGTGCTGTTGATACAATGCAATCTGTTTTTCTCAAAGAGGC 1301
Query 1302 TCCTGCAGCTGGTCCGTTTGCTGAAGAGACTACTTTAGTAGGCCTTACGTTTGGTGGATA 1361
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 TCCTGCAGCTGGTCCGTTTGCTGAAGAAACTACTTTAGTAGGCCTTACGTTTGGTGGATA 1361
Query 1362 TCTTCACTCCAAGATTAAATGCATGAAATGCCTCCACAAATCTGAGCGATCGGAGCTGAT 1421
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1362 TCTTCACTCCAAGATTAAATGCATGGCATGCCTCCACAAATCTGAGCGACCGGAGCTGAT 1421
Query 1422 GATGGATCTAACTGTTGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCTCA 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1422 GATGGATCTAACTGTTGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCTCA 1481
Query 1482 ATTTACAGCATACGAAGTCCTAGATGGAGAGAACCGGTACTTCTGTGGCAGATGTAAATC 1541
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1482 ATTCACAGCATACGAAGTCCTAGATGGAGAGAACCGGTATTTCTGTGGCAGATGTAAATC 1541
Query 1542 TTACCAGAAAGCCAAAAAGAAATTGATGATATTGGAAGGACCCAATATTCTTACTGTTGT 1601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1542 TTACCAGAAAGCCAAAAAGAAATTGATGATATTGGAAGGACCCAATATTCTTACTGTCGT 1601
Query 1602 GCTAAAACGTTTTCAGTCTGATAATTTTGGGAAGCTGAGCAAACCCATCCATTTTCCTGA 1661
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1602 GCTGAAACGTTTTCAGTCTGATAACTTTGGGAAGCTGAGCAAACCCATCCATTTTCCCGA 1661
Query 1662 GCTTCTCGATATTAGCCCGTATATGAGTGACCCAAATCACGGAGATCATCCCGTGTATAG 1721
||||||||||||||||||||||||||||||||||||||| || |||||||| || |||||
Sbjct 1662 GCTTCTCGATATTAGCCCGTATATGAGTGACCCAAATCATGGGGATCATCCGGTTTATAG 1721
Query 1722 TCTCTACGCAGTGGTGGTCCATTTGGATGCTATGAGCACTTCATTTTCAGGTCATTATGT 1781
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1722 TCTCTACGCAGTGGTGGTCCATTTGGATGCTATGAGCACTTTATTTTCAGGTCATTATGT 1781
Query 1782 TTGCTACATAAAAACCCTTCATGGAGACTGGTTCAAAATTGATGACAGCAATGTTTTTCG 1841
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 1782 TTGCTACATAAAAACCCTTGATGGAGATTGGTTCAAAATTGATGACAGCAATGTTTTCCC 1841
Query 1842 GGTTCAATTAGAGACTGTATTACTAGAAGGAGCATACATGCTTCTTTATGCAAGAAATTC 1901
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1842 GGTTCAGTTAGAGACTGTGTTACTAGAAGGAGCATACATGCTTCTTTATGCAAGGGATTC 1901
Query 1902 TCCGAGACCGGTGAGCAAGAACGGTGGTCGGAAATCAAAGGAAAGAAGAAATTTGGCTGC 1961
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1902 TCCGAGACCGGTGAGCAAGAACGGTGGTCGGAAATCAAAGCAAAGAAGAAATTTGGCCGC 1961
Query 1962 AATTCCGTCAAGAAA---CAACAAGAAACAGAGAGACAGTGATAATAACAGTTTGTTGCC 2018
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1962 AATTCCGTCAAGAAAGGGCAACAAGAAACAGAGAGACGGTGATAATAACAGTTTGTTGCC 2021
Query 2019 GCGTGTGGACTGGTCGAGTGGAAGTCTATCGTCAATGTTTAGCTCATCGGACACAACAAG 2078
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2022 GCGTGTGGACTGGTCGAGTGGAAGCCTGTCGTCAATGTTTAGCTCATCGGACACAACAAG 2081
Query 2079 CTCATGTAGCACAAAAGACTCATCAGGTATTGAGAATTGATCAGATTACCTGTTTGGTGG 2138
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2082 CTCATGTAGCACAAAAGACTCATCAGGTATTGAGAATTTATCAGATTACCTGTTTGGTGG 2141
Query 2139 AGTTGAACCGGTTTGGAAACGGGATCTTCATGATTCATCTGCTCTAACGTTTTATTGA 2196
||||||||||||||||||| |||||| |||| || |||| | ||||||| |||||
Sbjct 2142 AGTTGAACCGGTTTGGAAATGGGATCGTCATAATAAATCT-CA--AACGTTTGATTGA 2196
> AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein
Fb12, blastp match of 53% identity and 1.2e-13 P-value to
GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium
barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346
Length=2346
Score = 128 bits (69), Expect = 2e-28
Identities = 109/128 (85%), Gaps = 4/128 (3%)
Strand=Plus/Plus
Query 708 AAATGCATTTGAACACGGAAGA-ATTACATCTGAA--CCATCTAGTGCTTCTGCTGCAAT 764
||| ||| ||| ||| |||| | ||||||||||| |||| | ||||||||||||||||
Sbjct 1115 AAACGCACTTGGACATGGAA-ATGTTACATCTGAACCCCATATTGTGCTTCTGCTGCAAT 1173
Query 765 GTCATCTTCAACTGTTCTCCTACCTTCTAAAGCTAATAGTAAGCCAAAAGTGTCACAAGC 824
||||||||||||| ||||||||||||| ||||||| |||||||||| || |||| | ||
Sbjct 1174 GTCATCTTCAACTCTTCTCCTACCTTCAAAAGCTATTAGTAAGCCACAACTGTCCCGAGG 1233
Query 825 TTCAAGTA 832
||||||||
Sbjct 1234 TTCAAGTA 1241
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108935182650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5