BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg332761 Length=2196 Score E Sequences producing significant alignments: (Bits) Value AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 |... 3247 0.0 AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 128 2e-28 > AT5G65450.1 | Symbols: UBP17 | ubiquitin-specific protease 17 | chr5:26157863-26161096 FORWARD LENGTH=2196 Length=2196 Score = 3247 bits (1758), Expect = 0.0 Identities = 2072/2218 (93%), Gaps = 44/2218 (2%) Strand=Plus/Plus Query 1 ATGATGTTGGTTTTTCTTCTGATTCGTCGGCAATGGAGATCTGCTTCTGTGAGGAGAGAG 60 |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1 ATGATGTTGGTTTTTCTTCTGATTCGCCGGCAATGGAGATCTGCTTCTGTGAGAAGAGAA 60 Query 61 GAAGTTATTCGTCTCATTGCTTTAGCCACCGAAGAATCTTATCTGGCGGAGGAGGTTCGT 120 || || |||||||||||||||||||||||||| ||||||||| |||||||||| |||||| Sbjct 61 GAGGTGATTCGTCTCATTGCTTTAGCCACCGAGGAATCTTATTTGGCGGAGGAAGTTCGT 120 Query 121 GCCTCCACTGTTGA-T-----------TCGGTTTCGGATGTTTATCGTTGCGCTGTTTGT 168 || |||||||||| | |||||||| |||||||| ||||| || |||||| Sbjct 121 CCCGCCACTGTTGATTACGGCGGAGACTCGGTTTCTGATGTTTACCGTTGTGCCGTTTGT 180 Query 169 CTCTACCCTACCACTACTCGTTGCTCTCAGTGCAAATCTGTTCGTTACTGTTCAAGCAAG 228 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTATACCCTACCACTACTCGTTGCTCTCAGTGCAAATCTGTTCGTTACTGTTCAAGCAAG 240 Query 229 TGTCAATTTCTTCATTGGCGACGAGGCCATAAAGAAGAATGTCGATCGCCAGATTACGAT 288 |||||| ||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||| Sbjct 241 TGTCAAATTCTTCACTGGCGACGAGGTCATAAGGAAGAATGTCGATCGCCTGATTATGAT 300 Query 289 GAAGAAAAGGAGGAGTCTGTTAAATCTGATGATGATGCAAAAGAGTCGAATATGGATTTT 348 |||||||||||||||| |||| |||||||| ||||||| |||||||| ||| |||||||| Sbjct 301 GAAGAAAAGGAGGAGTATGTTCAATCTGATTATGATGCTAAAGAGTCTAATGTGGATTTT 360 Query 349 CCGTCTCGTGGGACTGCGTTTGAATCATCAGCAGAAGTACCCTCAAATGTGTCTGTTGAT 408 || |||||||||||||||| |||||||| | | | || ||||||||||||||| Sbjct 361 CCATCTCGTGGGACTGCGTATGAATCAT---C---A-T---CT--AATGTGTCTGTTGAT 408 Query 409 GTTGCCTGTGATATGTCTACAAGTAGGCCTAGTATTCATAAACTGCAAGCTAGATCTGAA 468 |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 409 GTTGCCTGTGATATGTCTACAAGTAGGCCTAGTATTCATAAAGTGCAACCTAGATCTGAA 468 Query 469 GCTGTGGATTTCACTACTTCTTTTAACTTAAAGGATAATCTCTATGAGACCAGGCCACTT 528 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 469 GCTGTGGATTTCACTACTTCTTTAAACATAAAGGATAATCTCTATGAGACCAGGCCACTA 528 Query 529 AGTAGGAAGAAATCACGTAATCGTACAGACAAGGTTGAATCAGCGAGAAATTATTCCAAA 588 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||| Sbjct 529 AGTAGGAAGAAATCACGTAATCGTACAGACAAGGTTGAGTCAGCCAGTAATTATTCCAAA 588 Query 589 GGAAAGACTGATGCAAAGCCGCGGAAACTTGGCAATCAAAATTCTCGTAAGTCAGGTGGT 648 ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| | Sbjct 589 GGAAAGACTGATGCAAAGCTGCGGAAACTTGGCAATCAAAATTCACGTAGGTCAGGTGAT 648 Query 649 TCGGCTGAA-ATGTCAATTACAGATCAATTTTTGTCAGTTGATGAGTATGAAGAAGAAAT 707 |||||| || ||||||||| ||||||||||||||||||||| | || |||||||||||| Sbjct 649 TCGGCT-AATATGTCAATTTCAGATCAATTTTTGTCAGTTG--G-GTTTGAAGAAGAAAT 704 Query 708 AAATGCATTTGAACACGGAAGAATTACATCTGAACCATCTAGTGCTTCTGCTGCAATG-- 765 |||||| || |||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 705 GAATGCACTTAAACATGAAAGAATTACATCTGAACCATCTAGTGCTTCTGCTGCAATGTC 764 Query 766 -TCATCTTCAACTGTTCTCCTACCTTCTAAAGCTAATAGTAAGCCAAAAGTGTCACAAGC 824 || ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 765 TTCGTCTTCAACTCTTCTCCTACCTTCAAAAGCTAACAGTAAGCCAAAAGTGTCACAAGC 824 Query 825 TTCAAGTAGTGGATTGAAAACATCGGTGCAGAAAGTTGTTCAGCATTTTAGACC-CCGAC 883 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 825 TTCAAGTAGTGGATTGAAAACATCGGTGCAGAAAGTTGTTCAGCATTTTAGACCTCC-AC 883 Query 884 AGTCGTC-AAAAATGTTTCAACCTTCCAGTTCTATTGATGAGATGAGCTTCTCATATGAG 942 ||||||| ||||| || |||||||||||||||||||||||||||||||||||| |||||| Sbjct 884 AGTCGTCCAAAAA-GTCTCAACCTTCCAGTTCTATTGATGAGATGAGCTTCTCGTATGAG 942 Query 943 TTGTTTGTGAAACTTTATTGTGATAAAGTAGAATTACAGCCATTTGGTCTTGTGAACTTA 1002 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 943 TTGTTTGTGAAACTTTATTGTGATAGAGTAGAATTACAGCCATTTGGCCTTGTGAACTTA 1002 Query 1003 GGAAACAGTTGCTATGCAAATTCTGTCCTTCAGTGCTTGGCATTCACTCGGCCACTTATA 1062 || |||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1003 GGGAACAGTTGTTATGCAAATGCTGTCCTTCAGTGCTTGGCATTCACTCGGCCACTGATA 1062 Query 1063 TCATACCTTAGTAGGGGATTACACTCTAAAACATGTAGAAAGAAGAGTTGGTGTTTTGTT 1122 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1063 TCATACCTTATTAGGGGATTACACTCTAAAACATGTAGAAAGAAGAGTTGGTGTTTTGTT 1122 Query 1123 TGTGAGTTTGAACATTTAATTTTAAAGGCAAGGGGAGGATAATCTCCT-TTATCCCCTAT 1181 |||||||||||||| |||||||||||||||||||||||| |||||||| || || ||||| Sbjct 1123 TGTGAGTTTGAACACTTAATTTTAAAGGCAAGGGGAGGAGAATCTCCTCTT-TCACCTAT 1181 Query 1182 CAAGATCTTATCAAAATTACAAAAGATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGA 1241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1182 CAAGATCTTATCAAAATTACAAAAGATTGGGAAGCATCTTGGCCCTGGAAAAGAAGAAGA 1241 Query 1242 CGCACACGAGTTTTTAAGGTGTGCTGTTGAGACAATGCAATCTGTTTTTCTCAAAGAGGC 1301 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1242 CGCGCACGAGTTTTTAAGGTGTGCTGTTGATACAATGCAATCTGTTTTTCTCAAAGAGGC 1301 Query 1302 TCCTGCAGCTGGTCCGTTTGCTGAAGAGACTACTTTAGTAGGCCTTACGTTTGGTGGATA 1361 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1302 TCCTGCAGCTGGTCCGTTTGCTGAAGAAACTACTTTAGTAGGCCTTACGTTTGGTGGATA 1361 Query 1362 TCTTCACTCCAAGATTAAATGCATGAAATGCCTCCACAAATCTGAGCGATCGGAGCTGAT 1421 ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 1362 TCTTCACTCCAAGATTAAATGCATGGCATGCCTCCACAAATCTGAGCGACCGGAGCTGAT 1421 Query 1422 GATGGATCTAACTGTTGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCTCA 1481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1422 GATGGATCTAACTGTTGAGATTGATGGGGATATAGGAAGCCTCGAAGAAGCACTTGCTCA 1481 Query 1482 ATTTACAGCATACGAAGTCCTAGATGGAGAGAACCGGTACTTCTGTGGCAGATGTAAATC 1541 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1482 ATTCACAGCATACGAAGTCCTAGATGGAGAGAACCGGTATTTCTGTGGCAGATGTAAATC 1541 Query 1542 TTACCAGAAAGCCAAAAAGAAATTGATGATATTGGAAGGACCCAATATTCTTACTGTTGT 1601 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1542 TTACCAGAAAGCCAAAAAGAAATTGATGATATTGGAAGGACCCAATATTCTTACTGTCGT 1601 Query 1602 GCTAAAACGTTTTCAGTCTGATAATTTTGGGAAGCTGAGCAAACCCATCCATTTTCCTGA 1661 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 1602 GCTGAAACGTTTTCAGTCTGATAACTTTGGGAAGCTGAGCAAACCCATCCATTTTCCCGA 1661 Query 1662 GCTTCTCGATATTAGCCCGTATATGAGTGACCCAAATCACGGAGATCATCCCGTGTATAG 1721 ||||||||||||||||||||||||||||||||||||||| || |||||||| || ||||| Sbjct 1662 GCTTCTCGATATTAGCCCGTATATGAGTGACCCAAATCATGGGGATCATCCGGTTTATAG 1721 Query 1722 TCTCTACGCAGTGGTGGTCCATTTGGATGCTATGAGCACTTCATTTTCAGGTCATTATGT 1781 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1722 TCTCTACGCAGTGGTGGTCCATTTGGATGCTATGAGCACTTTATTTTCAGGTCATTATGT 1781 Query 1782 TTGCTACATAAAAACCCTTCATGGAGACTGGTTCAAAATTGATGACAGCAATGTTTTTCG 1841 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | Sbjct 1782 TTGCTACATAAAAACCCTTGATGGAGATTGGTTCAAAATTGATGACAGCAATGTTTTCCC 1841 Query 1842 GGTTCAATTAGAGACTGTATTACTAGAAGGAGCATACATGCTTCTTTATGCAAGAAATTC 1901 |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1842 GGTTCAGTTAGAGACTGTGTTACTAGAAGGAGCATACATGCTTCTTTATGCAAGGGATTC 1901 Query 1902 TCCGAGACCGGTGAGCAAGAACGGTGGTCGGAAATCAAAGGAAAGAAGAAATTTGGCTGC 1961 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct 1902 TCCGAGACCGGTGAGCAAGAACGGTGGTCGGAAATCAAAGCAAAGAAGAAATTTGGCCGC 1961 Query 1962 AATTCCGTCAAGAAA---CAACAAGAAACAGAGAGACAGTGATAATAACAGTTTGTTGCC 2018 ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| Sbjct 1962 AATTCCGTCAAGAAAGGGCAACAAGAAACAGAGAGACGGTGATAATAACAGTTTGTTGCC 2021 Query 2019 GCGTGTGGACTGGTCGAGTGGAAGTCTATCGTCAATGTTTAGCTCATCGGACACAACAAG 2078 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 2022 GCGTGTGGACTGGTCGAGTGGAAGCCTGTCGTCAATGTTTAGCTCATCGGACACAACAAG 2081 Query 2079 CTCATGTAGCACAAAAGACTCATCAGGTATTGAGAATTGATCAGATTACCTGTTTGGTGG 2138 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2082 CTCATGTAGCACAAAAGACTCATCAGGTATTGAGAATTTATCAGATTACCTGTTTGGTGG 2141 Query 2139 AGTTGAACCGGTTTGGAAACGGGATCTTCATGATTCATCTGCTCTAACGTTTTATTGA 2196 ||||||||||||||||||| |||||| |||| || |||| | ||||||| ||||| Sbjct 2142 AGTTGAACCGGTTTGGAAATGGGATCGTCATAATAAATCT-CA--AACGTTTGATTGA 2196 > AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein Fb12, blastp match of 53% identity and 1.2e-13 P-value to GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346 Length=2346 Score = 128 bits (69), Expect = 2e-28 Identities = 109/128 (85%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 708 AAATGCATTTGAACACGGAAGA-ATTACATCTGAA--CCATCTAGTGCTTCTGCTGCAAT 764 ||| ||| ||| ||| |||| | ||||||||||| |||| | |||||||||||||||| Sbjct 1115 AAACGCACTTGGACATGGAA-ATGTTACATCTGAACCCCATATTGTGCTTCTGCTGCAAT 1173 Query 765 GTCATCTTCAACTGTTCTCCTACCTTCTAAAGCTAATAGTAAGCCAAAAGTGTCACAAGC 824 ||||||||||||| ||||||||||||| ||||||| |||||||||| || |||| | || Sbjct 1174 GTCATCTTCAACTCTTCTCCTACCTTCAAAAGCTATTAGTAAGCCACAACTGTCCCGAGG 1233 Query 825 TTCAAGTA 832 |||||||| Sbjct 1234 TTCAAGTA 1241 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 108935182650 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5