BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332767
Length=2304
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65500.1 | Symbols: | U-box domain-containing protein kinas... 2926 0.0
> AT5G65500.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:26181093-26183997 REVERSE LENGTH=2376
Length=2376
Score = 2926 bits (1584), Expect = 0.0
Identities = 1835/1954 (94%), Gaps = 25/1954 (1%)
Strand=Plus/Plus
Query 353 GGAAATCGAAGAGTGCGATAAGCGGATCGTTCTACGTTTATCAAAACAAACCAGAGTTTT 412
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 446 GGAAATCGAAGAGTGCGATAAGCGGATCGTTCTATGTTTATCAAAACAAACCAGAGTTTT 505
Query 413 GCGAATTATATATAATTTGTGGAGGCAAAATGGTTTCACTAAAGAGAGAGAATGATG-TG 471
|||| || ||||||||||||||||||||||||||||||||||||| | | ||| ||
Sbjct 506 GCGAGTTTTATATAATTTGTGGAGGCAAAATGGTTTCACTAAAGA-A-TG-ATG-TGAAC 561
Query 472 AACAACAATAGCAATATCAGAAGCTGGATTGGTAAGATGTTCCATGATCCAGGAAGAAAT 531
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 562 AACAACAATAGCAATATCAGAAGCTGGATTGGTAAGATGTTTCATGATCCAGGAAGAAAT 621
Query 532 CTAGACAGTTCATCCGGCAACAATGATGATCCAACGTCTAGTGGAAGTTCATGGGATAAG 591
|||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 622 CTAGACCGTTCATCTGGCAACAATGATGATCCAACGGCTAGTGGAAGTTCATGGGATAAG 681
Query 592 AATTTACAGGAGATAGAGATTTATTTCGAGCAGTTATTGAGTTTGAATCTTGAAGAAGAA 651
||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||
Sbjct 682 AATTTACAGGAGATAGAGAATTATTTCCAGCAGTTATTGAGTTTGAATCTTGCAGAAGAA 741
Query 652 GTAAA-CGAAAACGTTGTTGAAGAAGAACATGAGGAAGATAATGATGTGGCACTAAACGT 710
| ||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 742 G-AAACCGAAAACGTTGTTGAAGAAGAACAAGAGGATGATGATGATGTGGCACTAAACGT 800
Query 711 GCTGCAACATATGAACGTAGCAGAGAAGTTAGAGTATGTGAGAAGAAAGGTTAATGAAGC 770
||||||||||||| || || ||| || | ||||||||| ||||||||
Sbjct 801 GCTGCAACATATG---GT-------AA---AGA-TA-CT---AAGAAAGGTAAATGAAGC 842
Query 771 TAAGCTGATGATAGATGAGAAAAGAATAGAAGTCAAAGTCAACGCTGAAAGATCAGACAA 830
|||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 843 TAAGCTGATGATAGATGAGAAAAGCAGAGAAGTCAAAGTCAACGCTGAAAGATCAAACAG 902
Query 831 AGCTGAATGGGCAATCTCTTTATGCAATAGCAGAATTGAAGAGCTTGAAGCTTGGATTAA 890
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 903 AGCTGAATGGGCAATCTCTTTATGCAATAGCAGAATTGGAGAATTTGAAGCTTGGATTAA 962
Query 891 AGAAGAAAGCGAGAGACGAGAGAAACTTCAAGTGACGTTAGATTCGGATAAAGAATGTAT 950
|||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 963 AGAAGAAAGCGAGAGACGAGAGAAACTTCAAGCGACGTTGGACTCGGATAAAGAATGTAT 1022
Query 951 CGAAGAAGCGAAGAACTATGTTGAAAAAGGAAAAACAAAGCTACATTCACTTGCAGAGCT 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TGAAGAAGCGAAGAACTATGTTGAAAAAGGAAAAACAAAGCTACATTCACTTGCAGAGCT 1082
Query 1011 TCAAGAAGAGCTCTCAAGTAAAGTTAAGACAATGATGGAGGCTAAATCGCAGACGGAGGT 1070
|||||||| ||||||||| ||||||||||| ||||||||||||||||| ||| | |||||
Sbjct 1083 TCAAGAAGTGCTCTCAAGCAAAGTTAAGACGATGATGGAGGCTAAATCACAGGCTGAGGT 1142
Query 1071 CGAGCTAGAGAGGGTTGTGTTACAGAGAGGAGAGGTGATAATGGAGATTGAGAAACTTAG 1130
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 1143 CGAGCTAGAGAGGGTTGTGTTACAGAGAGGAGAGATGATAACGGAGATTGAGAAACTTAG 1202
Query 1131 GAATCAAAGAGATGTTTTCAATCGTAGGATTGAGTTTTGCAAGAAGAAAGAGGCGATAGG 1190
|| ||| ||||| || ||||| ||||||||||||||||||||| ||| ||||| ||||||
Sbjct 1203 GAGTCAGAGAGACGTGTTCAACCGTAGGATTGAGTTTTGCAAGGAGAGAGAGGTGATAGG 1262
Query 1191 TTTGGTTTCGAAGGAAGAAGTGAAGTGCGGGTATAGAGAGTATGTTGCAGAGGATATCAG 1250
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1263 TTCGGTTTCGAAGGAAGAAGTGAAGTGTGGGTATAGAGAGTATGTTGCAGAGGATATCAG 1322
Query 1251 ACTGGCAACAGAGAGTTATTCTGATCGATTGAGGTTGAAATCTGGTGGAAATTGGACAAA 1310
|||||| ||||||| ||||||||||||| |||| |||||||||||||| || ||||||||
Sbjct 1323 ACTGGCTACAGAGACTTATTCTGATCGACTGAGATTGAAATCTGGTGGTAACTGGACAAA 1382
Query 1311 TGTGTACCGAGGAAGGATCGAACATACAACTGTGGCTGTGAAAGTGATTGGTGATTGTTT 1370
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1383 TGTGTACCGAGGAAGGATCAAACATACAACTGTGGCTGTGAAAGTGATTGGTGATAGTTT 1442
Query 1371 ATCAGATGAGGATTTTGGAGCAAAAGTTAAGCTTTTGAATGAAATTAGGCATCCTAATTT 1430
||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 1443 ATCAGATGAGGCTTTTGGAGCAAAAGTTAAGCTTTTGAATGAGATTCGGCATCCTAACTT 1502
Query 1431 GGTAGCAATTGCTGGTTTTTGTTCACAAAGGCCTAAATGCATACTCTTTGAGTACATGCA 1490
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1503 GGTAGCAATTGCTGGGTTTTGTTCACAAAGGCCTAAATGCCTACTCTTTGAGTACATGCA 1562
Query 1491 TAATGGGAACTTAAGGGATAATCTATTCACATCGCAGAGGAAATCGAGAAGAAGCAAGAT 1550
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1563 TAATGGGAACTTGAGGGATAATCTATTCACATCACAGAGGAAATCGAGAAGAAGCAAGAT 1622
Query 1551 ACTGAAATGGCATGATAGGATTCGTATAGCACACCAGGTTTGCTCTGGTCTCGGGTTTCT 1610
|||||||||||||||||||||||||||||| || |||||||||||||| || || |||||
Sbjct 1623 ACTGAAATGGCATGATAGGATTCGTATAGCTCATCAGGTTTGCTCTGGACTAGGATTTCT 1682
Query 1611 CCATTCGGTTAAGCCTAAACCGATTGTCCATGGTCGCCTTACGCCGTCTAAGATCCTCTT 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 CCATTCGGTTAAGCCTAAACCGATTGTCCATGGTCGCCTTACGCCGTCTAAGATCCTCTT 1742
Query 1671 GGACCGTAACCTTGTTCCGAAAATAACCGGGTTTGGATTTATAATGCATAGCGATCAATC 1730
|||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 1743 GGACCGTAACCTTGTTCCGAAAATAACCGGTTTTGGACTTATAATGCATAGTGATCAATC 1802
Query 1731 TGATACGAAACCTGATGTGATGGCTTTTGGGGTTTTGCTTCTGCATCTTTTAACCGGGAG 1790
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1803 TGATACGAAACCTGATGTGATGGCGTTTGGGGTTTTGCTTCTGCATCTTTTAACCGGGAG 1862
Query 1791 GAACTGGCCTGGTTTGCTCAAGGCAATGTCTATGAACCAGACAAGCATTCTCAGGGATTT 1850
|||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1863 GAACTGGCATGGTTTGCTCAAGGCGATGTCTATGAACCAGACAAGTATTCTCAGGGATTT 1922
Query 1851 GGATCAAACAGCTGGTAAGTGGCCACTCGAGTTAGCTAAAGAGTTTGGTGCGCTTGCAGT 1910
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1923 GGATCAAACCGCTGGTAAGTGGCCACTCGAGTTAGCTAAAGAGTTTGGTGCACTTGCAGT 1982
Query 1911 GAAGTGTTCTTCAGTTAACAGAGGAGGGAACACAGATTTTTCAACCAAAGAGATAATGGA 1970
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1983 GAAGTGTTCTTCAGTTAACAGAGGAGGAAACATGGATTTTTCAACCAAAGAGATAATGGA 2042
Query 1971 AGAGCTTGGTAAGATAAGGGAAAAAGCCGATGAGTTTAAAACCACAGGAGGGTACGAGGA 2030
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2043 AGAGCTTGGTAAGATAAGGGAAAAAGCCGATGAGTTTAAAACCAAAGGAGGGTACGAGGA 2102
Query 2031 AGCAACCAATTCAAACATCAATGAAGGAGATCCGAATGACATACCAAGTGTTTTCATGTG 2090
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2103 AGCAACCAATTCAAACATGGATGAAGGAGATCCGAATGACATACCAAGTGTTTTCATGTG 2162
Query 2091 TCCAATACTTCAGGAAGTGATGAAGAATCCACATGTTGCAGCAGACGGGTTTTCGTATGA 2150
|||||||||||||||||| |||||||||||||| || |||||||| ||||||||||||||
Sbjct 2163 TCCAATACTTCAGGAAGTAATGAAGAATCCACACGTAGCAGCAGATGGGTTTTCGTATGA 2222
Query 2151 GCTTGAAGCCATAGAAGAATGGCTAAGCATGGGACATGACACATCTCCAATGACAAATCT 2210
||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2223 GCTCGAAGCCATACAGGAATGGCTAAGCATGGGACATGACACATCTCCAATGACAAACCT 2282
Query 2211 GAGACTCGATTACCAGATGCTTACACCAAATCATACCCTTCGTTCTCTGATTCAAGACTG 2270
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 2283 GAGACTCGATTACCAGATGCTTACACCAAATCACACCCTTCGTTCTCTTATTCAAGACTG 2342
Query 2271 GCATAGCAAAAGAGCAGCACAAGCTTCCTCCTAA 2304
|||||||||||||||||||||||||||||| |||
Sbjct 2343 GCATAGCAAAAGAGCAGCACAAGCTTCCTCTTAA 2376
Score = 505 bits (273), Expect = 9e-142
Identities = 305/320 (95%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAAACAAAGAATCAAGAATTGGAAGAAGAAGAAGTAGAATTAGGATCAATAATG 60
|||||||||||||||| ||| ||||| | |||| ||||| ||||| |||||||| ||||
Sbjct 1 ATGGAGGAAACAAAGACTCACGAATT-G--GAAGTAGAAGCAGAATCAGGATCAAGAATG 57
Query 61 GAGAAAGTATATATAGCTGTAGGAAACGATGTACAAGAAGGTCACAAGACGATTCATTGG 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 GAGAAAGTATATATAGCTGTAGGAAACGATGTACAAGAAGGTTACAAGACGATTCATTGG 117
Query 121 GCTTTAAAGAAATGGAACAACACACCTATCTCCATTGTTCTTCTTCATCTCTGCAACATT 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 118 GCTTTAAAGAAATGGAACAACATACCTATCTCCATTGTTCTTCTTCATCTCTGCAATATT 177
Query 181 TCTCAAGATTTTGTTTACACCCCTTTTGGGAAGCTTCCAGCGAGTTCTGTGAGTGAGGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 178 TCTCAAGATTTTGTTTACACCCCTTTTGGGAAGCTTCCAGCGAGTTCTGTGAGCGAGGAA 237
Query 241 AAGCTTCAAGTTCTAAGGAAATACGAGGAACAAAAGATCGACAAGTTGTTGTCCAAATAC 300
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 238 AAGCTTCAAGTTCTAAGGAAATACGAGGATCAAAAGATCGACAAGTTGCTGTCCAAATAC 297
Query 301 ATTACTTTTTGTGGAAAGGT 320
||||||||||||||||||||
Sbjct 298 ATTACTTTTTGTGGAAAGGT 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114356841510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5