BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332797
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65810.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1297 0.0
AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 749 0.0
> AT5G65810.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G49720.2);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26337665-26339746 REVERSE LENGTH=1124
Length=1124
Score = 1297 bits (702), Expect = 0.0
Identities = 752/777 (97%), Gaps = 0/777 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATGTCAAGAAGGCAAGTAAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCT 239
Query 61 TTGCATTCGAAATCGCGTTCGTCTCCTTTGTTATCTGTTTGCCTTGTTCTCGTGGGAGCA 120
||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 240 CTGCATTCAAAATCACGTTCGTCTCCTCTGTTATCAGTTTGCCTTGTTCTCGTGGGAGCA 299
Query 121 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATAAGAGAAGTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 TGCCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATGTTCAAAAGTATCAGAGAAGTC 359
Query 181 AGCAAGATCACAGGTGACTATTCTTGCACAGCAGAAGTTCATAGAGCCATTCCTGTTCTT 240
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 360 AGCAAGATTACAGGTGACTATTCTTGCACAGCAGAAGTTCAAAGAGCCATTCCTATTCTT 419
Query 241 AAGAGTGCGTATGGAGACAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGAGTGCGTATGGAGATAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCA 479
Query 301 GTCGTCTCGAGTCTGTTGAATGAAGAAGAGACGGAAGCATGGGGTGTTGAACCATATGAT 360
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 480 GTGGTCTCGAGTCTGTTGAATGAAGAAGAGACAGAAGCATGGGGTGTTGAACCATATGAT 539
Query 361 GTGGAGGATGCAGATTCTAACTGCAAAAGTCTTTTGCACAAAGGCCTTGTACGTGTGGCT 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 GTGGAGGATGCAGACTCTAACTGCAAAAGTCTTTTGCACAAGGGCCTTGTACGTGTGGCT 599
Query 421 GACATCAAATTCCCTCTGCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GACATCAAATTCCCTCTTCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGAC 659
Query 481 GCATTGGATTACCTCTCGCCCAGGTACCTGAACAAAACCGTGCCTGAACTTGCACGGGTC 540
|| |||||||||||||| |||||||||||||||||||| |||||||||||||| || |||
Sbjct 660 GCTTTGGATTACCTCTCACCCAGGTACCTGAACAAAACTGTGCCTGAACTTGCTCGCGTC 719
Query 541 GCTTCAGATGGTGTCGTTCTTTTTGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGCG 600
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 720 GCTTCAGATGGTGTCGTTCTTTTAGCAGGTAACCCTGGTCAACAAAAGGCTAAAGGTGGG 779
Query 601 GAATTGTCGAAATTTGGACGACCGGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 660
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 780 GAATTGTCGAAATTTGGACGGCCTGCTAAAATGCGTAGCTCGTCGTGGTGGATCCGTTTC 839
Query 661 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTCTCACAGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCT 899
Query 721 TCCAAGAGTTCATACAAACGAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 777
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TCCAAGAGTTCATACAAACCAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTAG 956
> AT3G49720.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus,
plasma membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G65810.1);
Has 64 Blast hits to 64 proteins in 11 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18440003-18442198
REVERSE LENGTH=1139
Length=1139
Score = 749 bits (405), Expect = 0.0
Identities = 653/771 (85%), Gaps = 24/771 (3%)
Strand=Plus/Plus
Query 18 AAGGCGTGTAGGGGATAGTGGAAGCTTCCCATTTGTAGGAGCTTTGCATTCGAAA-TCGC 76
||| ||||| || ||| ||||||||||||| |||| ||||||||| || || ||| || |
Sbjct 191 AAGACGTGTTGGCGATGGTGGAAGCTTCCCTTTTGCAGGAGCTTTACACTC-AAAGTCTC 249
Query 77 GTTCGTCTCCTTTGTTATCTGTTTGCCTTGTTCTCGTGGGAGCATGCCTTCTCATTGGTT 136
| || ||||| | ||||| ||||||||||||| ||||| || || |||||||||||||
Sbjct 250 GATCTTCTCCACTACTATCTATTTGCCTTGTTCTTGTGGGGGCTTGTCTTCTCATTGGTT 309
Query 137 ATGCTTACAGTGGTCCAGGTATGTTCAAAAGTAT-AAGAGAAGTCAGCAA-GATCACAGG 194
|||||||||||||||||||||| || |||||||| || |||||| ||||| | | |||||
Sbjct 310 ATGCTTACAGTGGTCCAGGTATATTTAAAAGTATCAA-AGAAGTTAGCAAAGTT-ACAGG 367
Query 195 TGACTATTCTTGCACAGCAGAAGTTCATAGAGCCATTCCTGTTCTTAAGA-GTGCGTATG 253
|||||||||||||||||||||||| || |||||||||||||| ||||||| | || ||||
Sbjct 368 TGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTACTTAAGAAG-GCTTATG 426
Query 254 GAGACAGCATGCGCAAAGTCCTGCACGTGGGTCCTGAAACATGCTCAGTCGTCTCGAGTC 313
|||| |||||||||||||| |||| ||||| ||||| ||||||||||| || || ||||
Sbjct 427 GAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTC 486
Query 314 TGTTGAATGAAGAAGAGACGGAAGCATGGGGTGTTGAACCATATGATGTGGAGGATGCAG 373
| ||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 487 TATTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGATATTGAGGATGCAG 546
Query 374 ATTCTAACTGCAAAAGTCTTT-TGCA-CAAAGGCCTTGTACGTGTGGCTGACATCAAATT 431
||||| ||||||| ||| ||| || | |||||| ||||||||||| ||||| ||||| ||
Sbjct 547 ATTCTCACTGCAAGAGT-TTTGTG-AGCAAAGGTCTTGTACGTGTTGCTGATATCAAGTT 604
Query 432 CCCTCTGCCTTACCGGTCAAAGTCGTTTTCTCTTGTGATCGTCTCAGACGCAT-TGGATT 490
|||||||| |||||| |||| || || ||||||||||| || ||||| || | ||||||
Sbjct 605 TCCTCTGCCCTACCGGGCAAAATCCTTCTCTCTTGTGATTGTGTCAGATGC-TCTGGATT 663
Query 491 ACCTCTCGCCCAGGTACCTGAACAAAACCGTGCCTGAACTTGCACGGGTCGCTTCAGATG 550
| ||||| |||| |||||||||||| ||||| |||||||| ||| |||| |||||||| |
Sbjct 664 ATCTCTCACCCAAGTACCTGAACAAGACCGTTCCTGAACTCGCAAGGGTGGCTTCAGACG 723
Query 551 GTGTCGTTCTTTTTGCAGGTAACCCTGGTCAACAAA-AGGCTAAAGGTGCGGAATTGTCG 609
|||| ||||||||||||||| ||||||||| || | || |||||| ||| ||| | ||
Sbjct 724 GTGTGGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAG-CTAAAGTTGCTGAACTCTCT 782
Query 610 AAATTTGGACGACCGGCTAAAATGCGTAGCTCGTCGTGGTGGATCCG-TTTCTTC-TCAC 667
||||| || ||||| ||||||||||||||| | |||||||||| ||| ||| ||| || |
Sbjct 783 AAATTCGGCCGACCCGCTAAAATGCGTAGCGCATCGTGGTGGAACCGCTTT-TTCGTC-C 840
Query 668 AGACGAACTTAGAGGAAAACGAAGCAGCAAGCAAGAAATTCGAACAAGCAGCTTCCAA-G 726
|||| |||||||| |||||||| ||| |||||||||| |||||||| || | |||||| |
Sbjct 841 AGACAAACTTAGAAGAAAACGATGCACCAAGCAAGAAGTTCGAACAGGCTGTTTCCAAAG 900
Query 727 -AGTTCATACAAACGAGCTTGTCAAGTTTTCCACCTCAAGCCATTACATTA 776
| || |||||||| ||| || ||||| |||||||||||||||||||||||
Sbjct 901 GA-TT-ATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTA 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5