BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332808

Length=540
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67640.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   527    4e-149


> AT5G67640.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:26969546-26970641 
REVERSE LENGTH=699
Length=699

 Score =  527 bits (285),  Expect = 4e-149
 Identities = 396/446 (89%), Gaps = 21/446 (5%)
 Strand=Plus/Plus

Query  1    ATGCGCCGGCGAGAAGAAAAGCGTCGAGAGTTTCACGAAGCTCTTCTTCAAACACTGTAT  60
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  94   ATGCGACGGCGAGAAGAAAAGCGTCGAGAATTTCACGAAGCTCTTCTTCAAACACTGTAT  153

Query  61   CCT-C--C-T--CCTCCTTC--AT-C-GCC-A----CCGTCTCCGGTGGAGGTTGTTGAT  105
            ||| |  | |  || |||||   | |  || |    ||| ||||||||||||||||||||
Sbjct  154  CCTCCTTCATCGCCACCTTCTTCTCCTTCCTATTCTCCGCCTCCGGTGGAGGTTGTTGAT  213

Query  106  GACGAACCATTCGATGTGACACTCATAAACCCAGAAGATTACTTGAAAATCGATTCATCG  165
             ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| 
Sbjct  214  AACGAACCATTCGATGTGTCACTCATAAACCCAGAGGATTACTTGAAAATCGATTCATCT  273

Query  166  AATCACGGGGACGTCAACGAAATCGGAGACG-ATTCGGGGATTGCAGAGAAACCGAGTCG  224
            |||||||| || | ||| ||||||||||||| ||| ||||||||||||||||| ||||||
Sbjct  274  AATCACGGAGAAGACAAAGAAATCGGAGACGAATT-GGGGATTGCAGAGAAACAGAGTCG  332

Query  225  AGCGAAGAGAAAGAGGTTAAGGAAGAAGATGCTCAAAGAGGAAGCAGCTCGACGGAAGAA  284
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  333  AGCGCAGAGAAAGAGGTTAAGGAAGAAGATGCTCAAAGAGGAAGCAGCTCGACGGAAGAA  392

Query  285  AGTCATCGGACCTTTACTTCCGACAGAAATGCTTCAGACCCATGATGGAATAAGAGTCGG  344
            |||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||
Sbjct  393  AGTCATCGGACCTTTACTTCCGACTGAAATGCTTCAGACCCATGATGAAAGAAGTGTCGG  452

Query  345  AGATGCTGGTGGGAGCAACT-TTGAAGAAGAAGATTCTGATGGAGACGAAGAAGAAACT-  402
            ||||||| |||||||||| | ||||||||||||||||||| || | |||||||||   | 
Sbjct  453  AGATGCTTGTGGGAGCAA-TGTTGAAGAAGAAGATTCTGACGGTGGCGAAGAAGAGGTTG  511

Query  403  AGTGGGAGCATTAGCGACATCTGCTC  428
            | ||||||||||||| |||| |||||
Sbjct  512  A-TGGGAGCATTAGCAACATATGCTC  536



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25870585705


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5