BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332814
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain... 1310 0.0
> AT5G67580.1 | Symbols: TRB2, ATTRB2, TBP3, ATTBP3 | Homeodomain-like/winged-helix
DNA-binding family protein | chr5:26955135-26957743
REVERSE LENGTH=1862
Length=1862
Score = 1310 bits (709), Expect = 0.0
Identities = 841/901 (93%), Gaps = 23/901 (3%)
Strand=Plus/Plus
Query 1 ATGGGTGCCCCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAGCTGGAGTT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 ATGGGTGCACCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAGCTGGAGTT 314
Query 61 CTTAAGCATGGCACTGGGAAGTGGCGTACCATACTCTCCGATACTGAGTTTAGTTTAATC 120
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 315 CTTAAGCATGGGACTGGGAAGTGGCGTACCATACTCTCGGATACTGAGTTTAGTTTAATC 374
Query 121 CTTAAGTCTCGCTCAAATGTTGATCTTAAGGACAAGTGGAGAAACATAAGCGTGACAGCT 180
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 375 CTTAAGTCTCGCTCTAATGTTGATCTTAAGGACAAATGGAGAAATATAAGCGTGACAGCT 434
Query 181 TTATGGGGTTCAAGGAAGAAGGCTAAACTTGCGCTTAAAATGACTCCGCC-GGCTACTAA 239
|||||||||||||||||||||||||||||||||||||| | |||||| || || ||||||
Sbjct 435 TTATGGGGTTCAAGGAAGAAGGCTAAACTTGCGCTTAAGAGGACTCCACCAGG-TACTAA 493
Query 240 ACAGGATGATAACAACACAGCTCTTAGCATTGTGGCTTTGGCTAATGACGATGAACGGGC 299
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||
Sbjct 494 ACAGGATGATAACAACACAGCTCTTACCATTGTGGCTTTGACTAATGATGATGAACGTGC 553
Query 300 AAAACCAACTT--CCC-------CTGGAGGT---T---------CTTGTGCTTCAAAGAG 338
||||||||||| ||| |||| ||| | |||||||||| |||||
Sbjct 554 AAAACCAACTTCCCCCGGAGGTTCTGGTGGTGGATCACCACGCACTTGTGCTTCTAAGAG 613
Query 339 ATCAATTACAAGTTTGGATAAGATCATCTTGGAGGCAATTACTAACTTGAAGGAACTACG 398
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct 614 ATCAATTACAAGTTTGGATAAGATCATCTTTGAGGCAATTACCAACTTGAGGGAACTACG 673
Query 399 CGGTTCTGACAGAACATCGATCTTTCTGTATATAGAGGAGAATTTCAAGACTCCACCGAA 458
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CGGTTCTGACAGAACATCAATCTTTCTGTATATAGAGGAGAATTTCAAGACTCCACCGAA 733
Query 459 TATGAAAAGACATGTCGCAGTACGATTAAAGCATTTATCATCGAATGGAACATTAGTTAA 518
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TATGAAAAGGCATGTCGCAGTACGATTAAAGCATTTATCATCGAATGGAACATTAGTTAA 793
Query 519 GATAAAGCACAAGTACAGGTTTTCTTCTAATTTTATCCCCGTAGGAGCAAGACAGATGTC 578
|||||||||||||||||||||||||||||||||||| |||| ||| |||||||||| | |
Sbjct 794 GATAAAGCACAAGTACAGGTTTTCTTCTAATTTTATTCCCGCAGGTGCAAGACAGAAGGC 853
Query 579 TCCTCAACTCTTTTTGGAAGGAAACAACAAGAAAGACCCACCAAAACCCGAGGAGAACGG 638
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 854 TCCTCAACTCTTTCTGGAAGGAAACAACAAGAAAGACCCAACAAAACCCGAGGAGAACGG 913
Query 639 CGCCAAAAGCCTCACTAAGTCCCGAGTAGACGGTGAGTTATTTATGATAAAAGGCATGAC 698
||||| || |||||||| | ||||||||||||||| |||| ||||||||||||||||||
Sbjct 914 TGCCAACAGTCTCACTAAATTCCGAGTAGACGGTGAATTATATATGATAAAAGGCATGAC 973
Query 699 AGCTCAAGAAGCTGCAGAGGCTGCAGCAAGAGCAGTTGCAGAGGCAGAATTTGCTATCAC 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 AGCTCAAGAAGCTGCAGAGGCTGCAGCAAGAGCAGTTGCAGAGGCAGAATTTGCTATCAC 1033
Query 759 AGAGGCTGAAGAAGCAGCAAAAGAGGCAGCAAGAGCAGAAGCAGAAGCTGAAGCTGCTCA 818
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1034 AGAGGCTGAACAAGCAGCAAAAGAGGCAGAAAGAGCAGAAGCAGAAGCTGAAGCTGCTCA 1093
Query 819 GATATTTGCAAAGGCAGCCATGAAAGCTTTGAAGTTCAAGATCCGTAATCATCCTTGGTG 878
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1094 GATATTTGCAAAGGCAGCCATGAAAGCTTTGAAGTTCAGGATCCGTAATCATCCTTGGTG 1153
Query 879 A 879
|
Sbjct 1154 A 1154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5