BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332819
Length=1419
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67540.2 | Symbols: | Arabinanase/levansucrase/invertase | ... 2257 0.0
AT3G49880.1 | Symbols: | glycosyl hydrolase family protein 43 ... 917 0.0
> AT5G67540.2 | Symbols: | Arabinanase/levansucrase/invertase
| chr5:26944028-26946365 REVERSE LENGTH=2016
Length=2016
Score = 2257 bits (1222), Expect = 0.0
Identities = 1358/1423 (95%), Gaps = 11/1423 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAACAACAACAAATACAATAAGAAATCAACATCTTTGCATTGCAATGATGCAGGA 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 ATGAAGAAGAACAACAAATACAATAAGAAATCAACATCTTTGCATTGCAATGATGCAGGA 435
Query 61 GGTTGCAGATATTCATTCCTTACTATTGTTTGGACCGTCGTCGGTTTTTTCCTGGTGGCT 120
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 436 GGTTGCAGATATTCATTGCTTACTATTGTTTGGACCGTCGTCGGGTTTTTCCTGGTGGCT 495
Query 121 CATCTTATCTCTCTGTATAGCAGAAAAGAT---AACATTCATCAACAAGTTTCTTCTGAT 177
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 496 CATCTTATCTCTCTGTATAGCAGAAAAGATAACAACATCCATCAACAAGTTTCTTCAGAT 555
Query 178 CAGTTACAATTAGTACATCATCAGCATCTTCATCATCCTGTTGTTCGTGAACTTGTAAGA 237
||||||||| ||||||||||| | | | | ||||||| |||||||||||||| |||||
Sbjct 556 CAGTTACAAGTAGTACATCAT---C-T-TGC-TCATCCTATTGTTCGTGAACTTATAAGA 609
Query 238 GTTGAAGAAGAGATCCTGAGAATGCCCCCACCTAGGAAGCGTTCTCCTCGTACTAGTAAA 297
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 610 GTTGAAGAAGAGGTCCTGAGAATGCCGCCACCTAGGAAGCGTTCTCCTCGTACTAGTAAA 669
Query 298 CGGAGATCGAGAAAACCGATCCCTATGGTTGAAGAGTTTCTTGACGAGAAGTCACCTATA 357
|||||||| ||||||||||||||| | ||||| |||||||||||||| |||||||| ||
Sbjct 670 CGGAGATCAAGAAAACCGATCCCTCTCGTTGAGGAGTTTCTTGACGACAAGTCACCAATT 729
Query 358 CGGCATCTTTTCTTTCCCGGTATCAAAACCGCCGCTTTTGGTCCCACCAAGGATATGGGA 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 730 CGACATCTTTTCTTTCCCGGTATCAAAACCGCCGCTTTTGGTCCCACCAAGGATATGGGA 789
Query 418 AACGAGACCTCGTATTACTTCCCTGGGAAAATTTGGATGGACACTGAAGGGAATCCAATT 477
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 790 AACGAGACATCGTATTACTTCCCCGGGAAAATTTGGATGGACACACAAGGGAATCCAATT 849
Query 478 CAAGCACATGGCGGAGGGATTCTGCTTGACGAGAAATCTAACACGTACTATTGGTATGGA 537
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 850 CAAGCACATGGCGGAGGGATTCTGCTTGACGTGAAATCTAACACTTACTATTGGTATGGA 909
Query 538 GAATATAAAGATGGACCGACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATA 597
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GAGTATAAAGATGGACCAACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATT 969
Query 598 ATAGGGGTTGGTTGTTACTCTTCAAAGGACTTATGGACATGGAAAAATGAAGGCATTGTA 657
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 ATTGGTGTTGGTTGTTACTCTTCAAAGGACTTATGGACATGGAAAAATGAAGGCATTGTA 1029
Query 658 CTCGGAGCTGAAGAAACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAGCGA 717
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1030 CTCGGAGCTGAGGAAACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAACGA 1089
Query 718 CCCAAAGTGATCTACAATGAAAAGACAGAGAAGTATGTGATGTGGATGCATATCGACGAT 777
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1090 CCCAAAGTGATCTACAATGAAAAGACAGAAAAGTATGTGATGTGGATGCATATCGACGAT 1149
Query 778 GCAAACTACACTAAAGCTTCAGTTGGTGTAGCCATTAGCGATAACCCGACAGGTCCTTTC 837
||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct 1150 GCAAACTACACTAAAGCTTCAGTTGGTGTGGCCATTAGCAATAGCCCGACAGGTCCTTTC 1209
Query 838 GAGTATCTATACAGTAAACGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GAGTATCTATACAGTAAACGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAA 1269
Query 898 GATGACGATGGTGATGCTTACCTGATATATTCGTCTGAAGTCAACAGCGTGCTTCATATT 957
|| |||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1270 GACGACGATGGTGTTGCTTACCTGATATATTCGTCTGAAGTCAATAGTGTGCTTCATATT 1329
Query 958 GGACCCTTAACGGAAGATTACCTCGATGTGACACCGGTTATGAAGAGAGTAATGGTGGGA 1017
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GGACCCTTGACGGAAGATTACCTCGATGTGACACCGGTTATGAAGAGAGTAATGGTGGGA 1389
Query 1018 CAACACAGGGAAGCTCCAGCTATCTTCAAGTATCAGAATATTTATTACATGGTCACTTCC 1077
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1390 CAACACAGGGAAGCTCCAGCTATCTTCAAGCATCAGAATATTTATTACATGGTCACTTCC 1449
Query 1078 TGGTGCACTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCAGAATCTATAATGGGA 1137
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1450 TGGTGCACTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCTGAATCTATAATGGGT 1509
Query 1138 CCATGGGAGAAATTGGGGAATCCGTGTATCGGTGGTAACAAAGTTTTCCGGTTAACAACA 1197
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1510 CCATGGGAGAAATTGGGGAACCCGTGTATCGGTGGTAACAAAGTTTTCCGGTTAACAACA 1569
Query 1198 TTCTTTGCGCAGAGCACTTATGTGATTCCGTTACCGGGTGTTCCCGGTGCATTTATATTC 1257
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1570 TTCTTTGCGCAGAGCACTTATGTGATTCCTTTACCTGGTGTTCCCGGTGCGTTTATATTC 1629
Query 1258 ATGGCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATATGTGTGGTTACCGTTA 1317
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1630 ATGGCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATACGTGTGGTTACCGTTA 1689
Query 1318 GTTATAGGTGGACCTGCTGATCAGCCTTTGGAGTTCAATTTCGGGTTCCCA-CTGTGGTC 1376
|||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||
Sbjct 1690 GTTATAGGTGGACCTGCTGACCAGCCTTTGGAGTTCAACTTCGGGTTCCCATC-GTGGTC 1748
Query 1377 GAGAGTGTCTATCTACTGGCACAGCAAATGGCGGCTGCCTTAA 1419
|||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1749 CAGAGTGTCCATCTACTGGCACAGTAAATGGCGGCTGCCTTAA 1791
> AT3G49880.1 | Symbols: | glycosyl hydrolase family protein 43
| chr3:18496249-18498713 FORWARD LENGTH=2066
Length=2066
Score = 917 bits (496), Expect = 0.0
Identities = 1006/1244 (81%), Gaps = 68/1244 (5%)
Strand=Plus/Plus
Query 208 CATCATCCTG-TTGTTCGTGAACTTGTAA-GAGTTGAAGAAGAG---ATCCTGAGAATGC 262
|||||||| | |||| ||||| || | || | |||||||||||| |||| | ||||
Sbjct 516 CATCATCC-GATTGTCCGTGAGCTCG-AACGCGTTGAAGAAGAGAATATCC--A-TATGC 570
Query 263 CCCCACCTAGGAAGCGTTCTCCTCGTACTAGT-AAACGGAGATCGAGAAAAC-CGATCC- 319
| || |||||||||||||||||||| ||| | ||||||| | | | ||||| | | ||
Sbjct 571 CGCCTCCTAGGAAGCGTTCTCCTCGCGCTA-TCAAACGGA-AACCA-AAAACACCAACCA 627
Query 320 CTATGGTTGAAGAGTTTCTTGACGAGAAGTCACCTATACGGCATCTTTTCTTTCCC-GGT 378
|| | || ||||||||||| |||||||| |||| || || |||||||| |||||| | |
Sbjct 628 CTTTAGTCGAAGAGTTTCTCGACGAGAATTCACAGATTCGACATCTTTT-TTTCCCTGAT 686
Query 379 ATCAAAACCGCCGCTTTTGGTCCCACCAAGG-ATATGGGAAACGAGACCTCG---TATTA 434
|| ||| | ||||||||||| ||||||| | || || || || ||| || ||
Sbjct 687 AT-GAAA--TCAGCTTTTGGTCCTACCAAGGAAGAT-ACTAATGACACATCGCATTACTA 742
Query 435 CTTCCCTGGGAAAATTTGGATGGACACTGAAGGGAATCCAATTCAAGCACATGGCGGAGG 494
|||||| |||| |||||||| ||||| ||||||||||| ||||||||||| || || ||
Sbjct 743 CTTCCCGGGGAGAATTTGGACAGACACGGAAGGGAATCCGATTCAAGCACACGGTGGTGG 802
Query 495 GATTCTGCTTGACGAGAAATCTAACACG--TACTATTGGTATGGAGAATATAAAGATGGA 552
||| || |||| || | ||| || | | |||||||||||||| |||||||||||||||
Sbjct 803 CATTTTGTTTGATGACATATC-AA-AGGTTTACTATTGGTATGGTGAATATAAAGATGGA 860
Query 553 CCGACTTACCATGCTCACAAGAAAGGACCAGCTAGAGTTGATATAATAGGGGTTGGTTGT 612
|| ||||| | | ||||||||||||| | ||||||||||||||||| || ||||| |||
Sbjct 861 CCAACTTATCTTTCTCACAAGAAAGGTGCTGCTAGAGTTGATATAATCGGTGTTGGATGT 920
Query 613 TACTCTTC-AAAGGACTTATGGACATGGAAAAATGAAGGCATTGTACTCGGAGCTGAAGA 671
||||| || ||| || ||||||||||||||||| ||||| ||||| | | ||| |||||
Sbjct 921 TACTCGTCGAAA-GATTTATGGACATGGAAAAACGAAGGTGTTGTATTAGCAGCCGAAGA 979
Query 672 AACAAACAAGACCCATGATTTGCATAAATCCAATGTTCTTGAGCGACCCAAAGTGATCTA 731
|||| | |||| ||||| || || |||||||||||||||||||| || |||||||| ||
Sbjct 980 AACAGATGAGACACATGACTTACACAAATCCAATGTTCTTGAGCGTCCTAAAGTGATATA 1039
Query 732 CAATGAAAAGACAGAG-AAGTATGTGATGTGGATGCATATCGACGATGCAAACTACACTA 790
|||| | | |||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1040 CAATTCAGATACAG-GTAAGTACGTGATGTGGATGCATATCGACGATGCAAACTACACTA 1098
Query 791 AAGCTTCAGTTGGTGTAGCCATTAGCGATAACCCGACAGGTCCTTTCGAGTATCT-ATAC 849
||||||| |||||||||||||||||||||||||| |||||||| ||||| || || ||||
Sbjct 1099 AAGCTTCGGTTGGTGTAGCCATTAGCGATAACCCAACAGGTCCATTCGATTA-CTTATAC 1157
Query 850 AGTAAA-CGTCCACACGGGTTCGATAGTCGGGACATGACTGTCTTCAAAGATGACGATG- 907
|| | | || ||||||||||| |||||| | |||||||| |||| |||||| || |||
Sbjct 1158 AGCAGATCG-CCACACGGGTTTGATAGTAGAGACATGACAGTCTACAAAGACGATGATAA 1216
Query 908 -GTGATGCTTACCTGATATATTCGTCTGAAGTCAACAGCGTGCTTCATATTGGACCCTTA 966
|| | || ||| |||||||||| || || | |||||||||||| ||||| || ||| |
Sbjct 1217 CGT-A-GCCTACTTGATATATTCATCAGAGGACAACAGCGTGCTGCATATCGGTCCCCTG 1274
Query 967 ACGGAAGA-TTACCTCGATGTGACA-CCGGTTATGAAGAGAGTAATGGTGGGACAACACA 1024
|| || || |||||||||||||| | ||||| ||||||||| | ||||||||||||||||
Sbjct 1275 ACCGA-GAATTACCTCGATGTGA-AGCCGGTAATGAAGAGAATCATGGTGGGACAACACA 1332
Query 1025 GGGAAGCTCCAGCTATCTTCAAGTATCAGAATATTTATTACATGGTCACTTCCTGGT-GC 1083
| |||||||| ||||||||||| |||| || | ||| |||||| |||| || |||| ||
Sbjct 1333 GAGAAGCTCCGGCTATCTTCAAACATCAAAACACTTACTACATGATCACGTC-TGGTTGC 1391
Query 1084 ACTGGTTGGGCACCAAATGAAGCCTTGGCTCATGCGGCAGAATCTATAATGGGACCATGG 1143
|| || ||||||||||| ||||| || |||||||| || || || |||||||| || |||
Sbjct 1392 ACCGGATGGGCACCAAACGAAGCATTAGCTCATGCCGCTGAGTCGATAATGGGTCCGTGG 1451
Query 1144 GAGAAATTGGGGAATCCGTGTATCGGTGGTAACAA-AGTTTTCCGGTTA-ACAACATTCT 1201
|||| ||| |||||||| ||| | || || |||| | ||||||| || || || || |
Sbjct 1452 GAGACATTAGGGAATCCATGTGTTGGCGGGAACAGTA-TTTTCCG-TTCGACGACGTT-T 1508
Query 1202 TT-GCGCAGAGCAC-TTATGTGATTCCGTTACCGGGTGTTCCCGGTGCATTTATATTCAT 1259
|| ||||||||||| || |||||||||||||| |||||||| |||| |||||||| ||
Sbjct 1509 TTCGCGCAGAGCACGTTC-GTGATTCCGTTACCAGGTGTTCCTGGTGTGTTTATATTTAT 1567
Query 1260 GGCAGATAGGTGGAACCCGGCTGATTTGCGGGATTCCAGATATGTGTGGTTACCGTTAGT 1319
||| ||||||||||| ||||| |||||||| ||||| |||||| ||||||||||||| |
Sbjct 1568 GGCCGATAGGTGGAATCCGGCGGATTTGCGAGATTCGAGATATTTGTGGTTACCGTT-GA 1626
Query 1320 TA-TAGGTGGACCTGCTGATCAG-CCT-TTGGAGT-TCAATTTCGGGTTCCC-ACTGTGG 1374
|| | |||||||| ||||||| | ||| ||| ||| | | ||||||||| || | |||||
Sbjct 1627 TAGTTGGTGGACCGGCTGATC-GTCCTCTTG-AGTAT-AGTTTCGGGTTTCCGA-TGTGG 1682
Query 1375 TCGAGAGTGTCTATCTACTGGCACAG-CAAATGGCGGCTGCCTT 1417
|||||||| ||| | || ||||| || ||| |||||| ||||||
Sbjct 1683 TCGAGAGTTTCTGTATATTGGCATAGACAA-TGGCGGTTGCCTT 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69929359185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5