BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332832
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67411.1 | Symbols: | GRAS family transcription factor | ch... 904 0.0
AT3G49950.1 | Symbols: | GRAS family transcription factor | ch... 499 2e-140
> AT5G67411.1 | Symbols: | GRAS family transcription factor |
chr5:26898401-26899097 REVERSE LENGTH=609
Length=609
Score = 904 bits (489), Expect = 0.0
Identities = 571/611 (93%), Gaps = 3/611 (0%)
Strand=Plus/Plus
Query 463 ATGCAAATCCCTACTCTTATAGACTCCATGGCAAACAAACTCCACAAACAACCCCCTCCG 522
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 ATGCAAATCCCTACTCTTATAGACTCCATGGCAAACAAACTCCACAAAAAACCGCCTCCG 60
Query 523 CTTCTCAAACTCACTGTCATTGCTTCCGACACTGAATCTCATCCGCCACCGTTGCTCGGA 582
|||||||||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||
Sbjct 61 CTTCTCAAACTCACCGTCATTGCTTCCGACGCTGAATTTCATCCGCCGCCGTTGCTCGGA 120
Query 583 ATCTCCTACGAAGAGCTGGGTTCAAAGCTAGTAAACTTCGCGACAACACGTAACATAGCA 642
||||||||||||||||| ||||||||||||||||||||||| || ||||||||| | |||
Sbjct 121 ATCTCCTACGAAGAGCTAGGTTCAAAGCTAGTAAACTTCGCAACCACACGTAACGTTGCA 180
Query 643 ATGGAGTTTAGAATCATCTCTTCTTCTTACTCCGACGGCCTCTCCTCCCTTATCGAACAA 702
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGGAGTTTAGAATCATATCTTCTTCTTACTCCGACGGCCTCTCCTCCCTTATCGAACAA 240
Query 703 CTACGAATCGACCCATTCGTCTTCAATGAAGCTCTCGTTGTTAACTGCCACATGATGCTT 762
||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 241 CTAAGAATCGACCCATTCGTCTTCAACGAAGCTCTCGTCGTTAACTGCCACATGATGCTT 300
Query 763 CATTACATCCCCGACGAAACCTTAACTTCGAATCCTCTCCGATCAGTTTTATTGAAAGAA 822
|| || ||||||||||||| ||||||||||||| || | |||||||||| |||||||||
Sbjct 301 CACTATATCCCCGACGAAATATTAACTTCGAATC-TC-C-GATCAGTTTTCTTGAAAGAA 357
Query 823 CTTCGAGATCTAAACCCAACGATCGTAACCCTAATTGACGAAGACTCGGATTTCACCTCG 882
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 358 CTTCGAGATCTAAACCCAACGATCGTAACCCTTATCGACGAAGACTCGGATTTCACGTCG 417
Query 883 ACTAACTTTATCTCCAGGTTACGGTCTCTCTACAATTATATGTGGATTCCTTACGAAACC 942
||||||||||||||||||||||||||||| || || || ||||||||||||||||| |||
Sbjct 418 ACTAACTTTATCTCCAGGTTACGGTCTCTTTATAACTACATGTGGATTCCTTACGATACC 477
Query 943 GCCGACATGTTTTTGACACGCGGCAGCGAGCATAGGCAGTGGTACGAGGCAGATATAAGT 1002
||||| |||||||||||||| || |||||||| || |||||||| |||||||||||||||
Sbjct 478 GCCGAGATGTTTTTGACACGTGGTAGCGAGCAAAGACAGTGGTATGAGGCAGATATAAGT 537
Query 1003 TGGAAGATAGATAACATAGTAGCCAAGGAAGGTGCGGAGAGGGTGGAGAGATTGGAGCCG 1062
||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 538 TGGAAGATAGATAACGTAGTAGCCAAGGAAGGTGCGGAGAGAGTGGAGAGATTAGAGCCG 597
Query 1063 AAGAGCCGGTG 1073
|||||||||||
Sbjct 598 AAGAGCCGGTG 608
> AT3G49950.1 | Symbols: | GRAS family transcription factor |
chr3:18522510-18523906 FORWARD LENGTH=1397
Length=1397
Score = 499 bits (270), Expect = 2e-140
Identities = 923/1222 (76%), Gaps = 109/1222 (9%)
Strand=Plus/Plus
Query 70 TGCGGCGATGCCAACTGCATGGAGCAGCTTCTCCTCCATTGCGCAAAGGCCATCGAATCA 129
|||||||| || |||| |||||| ||||| ||||| || ||||| | ||||| || ||
Sbjct 121 TGCGGCGACGCTAACTTCATGGAACAGCTCCTCCTTCACTGCGCCACCGCCATAGACTCC 180
Query 130 AACGACGCCACGTTGGCTCAACAGATCATTTGGGTGCTCAACAACCTCGCTTCACCCGAC 189
|||||||| | || |||| || ||| | ||||| ||||||||| ||||| |||| |||
Sbjct 181 AACGACGCTGCATTAACTCACCAAATCCTCTGGGTCCTCAACAACATCGCTCCACCAGAC 240
Query 190 GGAGACTCAACTCAGA-GACTCGCTTCCTCCTTCCTCCGCGCGTTAATCTCACGCGCCGC 248
|| ||||| || || | | || | ||| | |||||||||||||| ||||||||||||
Sbjct 241 GGTGACTCCACCCA-ACGTCTTACATCCGCATTCCTCCGCGCGTTGCTCTCACGCGCCGT 299
Query 249 CTCCAAAAGCCCTGCGTTCGCGTTTCTAT-CACTGGCTGCTACCGCTTCCGTCTCC-CA- 305
|||||||| ||| | | | | | || || ||| | || |||||| | || ||
Sbjct 300 CTCCAAAA-CCC--C-TACAC-TATC-ATCCAC---C-ATTA--GCTTCC-T-ACCTCAG 345
Query 306 GAAAATG--CTACACCGGTTCTCCGTCATAGAGCTCGCGGAGTTT-GTAGACTTAACGCC 362
| ||| || || || ||||| ||| | ||| | || | ||| |||||| | || ||
Sbjct 346 GCCGATGAACTCCATCGTTTCTCAGTCGTGGAGTTAGCCG-CTTTCGTAGACCTCACTCC 404
Query 363 GTGGCACCGTTTCGGATTCATAGCCGCGAACGCCGCAATCCTCGA-CGCCGTCGAAGGTT 421
||||||||| ||||||||||| || || |||||||| || || | |||||| |||||||
Sbjct 405 GTGGCACCGGTTCGGATTCATTGCAGCCAACGCCGCGAT-CTTAACCGCCGTTGAAGGTT 463
Query 422 ATTCCTCTGTTCACATCGTTGACTTAAGTTTGACTCACTGCATGCAAATCCCTACTCTTA 481
| || | ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 464 ACTCAACGGTTCACATCGTTGACTTAAGTTTGACTCATTGTATGCAAATCCCTACTCTTA 523
Query 482 TAGACTCCATGGCAAACAAACTCCACAAACAACCCCCTCCGCTTCTCAAACTCACTGTCA 541
||||| ||||||||| | |||| |||||| | || ||||||||| |||||||| |||
Sbjct 524 TAGACGCCATGGCAAGCCGACTCAACAAAC--CTCC-TCCGCTTCTTAAACTCACCGTCG 580
Query 542 T-TGCTTCCGACACTGAATCTCATCCGCCACCGTTGC-TCGGA-ATCTCCTACGAAGAGC 598
| | ||||| | | || | | ||| | ||| || | || | |||||||||||||| |
Sbjct 581 TCT-CTTCCT-C-C-GAC-CACTTCC-C-ACCATT-CATCA-ACATCTCCTACGAAGAAC 631
Query 599 TGGGTTC-AAAGCTAGTAAACTTCGCGACAACACGTAACAT-AGCAATGGAGTTTAGAAT 656
| || || ||| ||||| |||||||| || ||||| ||||| | |||||||||| | |||
Sbjct 632 TCGGATCTAAA-CTAGTCAACTTCGCCACCACACGAAACATTA-CAATGGAGTTCACAAT 689
Query 657 CAT-CTCTTCTTCTTACTCCGACGGCCTCTCCTCCCT-T-ATCGAACAACTACGAATCGA 713
| | | ||||| |||||||||| ||| |||||||||| | | | |||| |||| || |
Sbjct 690 CGTAC-CTTCTACTTACTCCGATGGCTTCTCCTCCCTCTTA-C-AACAGTTACGGATTTA 746
Query 714 CCCATTCGTC-TTCAATGAAGCTCTCGTTGTTAACTGCCACATGATGCTTCATTACATCC 772
|| ||| || ||||| ||||||||||| |||||||| ||||||||||| | ||||||||
Sbjct 747 TCC-TTCTTCATTCAACGAAGCTCTCGTCGTTAACTGTCACATGATGCTCCGTTACATCC 805
Query 773 CCGACGAAACCTTAACTTCGA--ATC--C-TC--TCCGATCAGTTTTATTGAAAGAACTT 825
| || ||| || ||||||| | ||| | || ||||| ||||||| |||||| ||||
Sbjct 806 CTGAAGAACCCCTAACTTC-ATCATCATCATCGCTCCGAACAGTTTTCTTGAAACAACTC 864
Query 826 CGAGATCTAAACCCAACGA-TCGTAACCCTAATTGACGAAGAC-TCGGATTTCACCTCG- 882
||| | | || |||| || ||||||||||||| || |||||| | | || |||| |||
Sbjct 865 CGATCTTTGAATCCAA-GAATCGTAACCCTAATCGAAGAAGACGTAG-ATCTCACATCGG 922
Query 883 ACTAACTTTATCT--CCAGGTTACGGTCT-C-TCTACAATTA-TATGTGGATTCC-TTAC 936
| ||||| | | || ||||| || | | || | | | | | |||||||| || |
Sbjct 923 AG-AACTTGGT-TAACC-GGTTAAAATCGGCGTTTA-ACT-ACT-TCTGGATTCCGTT-C 975
Query 937 GAAACCGCCG-ACATGTTTTTGACACGCGGCAGCGAGCATAGGCAGTGGTACGAGGCAGA 995
|| || | || ||| |||| ||| | | ||| || | | | |||||||||||| ||
Sbjct 976 GATAC-GACGGACACGTTTATGA---GTG--AGC-AG-AGACG--GTGGTACGAGGCGGA 1025
Query 996 TATAAGTTGGAAGATAGATAACATAGTAGCCAAGGAAGGTGCGGAGAGGGTGGAGAG-AT 1054
||||||||||||||||| ||| | || || ||||||||||||||||| |||||||| |
Sbjct 1026 GATAAGTTGGAAGATAGAAAACGTGGTGGCGAAGGAAGGTGCGGAGAGAGTGGAGAGGAC 1085
Query 1055 TGGAGCCGAAGAGCCGGTGGTTCGAGCGGATGAGGGAAGCTAAGTTTGCCGGAGTT-GGG 1113
|||| ||||||| |||||| | ||| | ||||| || ||| |||| | |||||| |||
Sbjct 1086 -GGAGACGAAGAGACGGTGGATAGAGAGAATGAGAGAGGCTGAGTTCGGTGGAGTTAGGG 1144
Query 1114 TTCGGCGA-GACGGCGG-GGACGGAGGTTAAAACGATGCTGGAGGAACACGCCACCGGTT 1171
|| || || | ||| || |||| || || ||||||||||||| ||||| ||| |
Sbjct 1145 TTAAA-GAAGATG-CGGTGG-CGGATGTGAAGGCGATGCTGGAGGAGCACGCTGTCGGGT 1201
Query 1172 GGGGAATGAAGAAAGATGTTGACGATGATGATGACGTGGAACGTTTTGTGCTGACGTGGA 1231
||||||||||||| || | |||| || || || || | | |||||||||||||
Sbjct 1202 GGGGAATGAAGAAGGAAG---ACGACGACGA-GA-GT----C-TC--GTGCTGACGTGGA 1249
Query 1232 AGGGACATAGTGTTGTGTTTGC 1253
| || |||||||||||||||||
Sbjct 1250 AAGGTCATAGTGTTGTGTTTGC 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63905293785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5