BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332860
Length=813
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67120.1 | Symbols: | RING/U-box superfamily protein | chr5... 839 0.0
> AT5G67120.1 | Symbols: | RING/U-box superfamily protein | chr5:26787830-26789737
REVERSE LENGTH=819
Length=819
Score = 839 bits (454), Expect = 0.0
Identities = 693/806 (86%), Gaps = 25/806 (3%)
Strand=Plus/Plus
Query 19 ATACCGGATAGTCCTTTTAGCTTCATCTGGCTACTATTTGGAGACGACTGGCATCTATGG 78
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 28 ATACCGGATAGTCCTTTTAGCTTCATGTGGCTACTATTTGGAGACGACTGGGATCTATGG 87
Query 79 GACACTTACCCAACAGTTGACGCTGATGCCATCTCTCCAGATCCAACTG-TTGATGTGAA 137
||||||||| || ||||||| ||||||| |||||| ||||||||||| | ||||||||||
Sbjct 88 GACACTTACTCACCAGTTGATGCTGATGACATCTCACCAGATCCAAC-GCTTGATGTGAA 146
Query 138 CCGTGATAGTCCGACGATAGAGTCCGGTTCACTTATAAGGACAGTTAGTTGGGAAGAAGA 197
| ||||| ||||| | |||||| ||||||| ||| | |||||| ||||||||| | || |
Sbjct 147 CGGTGATGGTCCGGCAATAGAGCCCGGTTCCCTTCTGAGGACAATTAGTTGGG-A-AACA 204
Query 198 TTCGTTCGAGCAGCACTTC-TTACAGTCATCGATCAATGAACAATCTGAAACAGCATCAC 256
||||||||||| || || ||||| |||| || | ||||||||||||||||| |||||
Sbjct 205 -ACGTTCGAGCAGGAC-TCGTTACAATCATGGAACGATGAACAATCTGAAACAACATCAG 262
Query 257 AAGAAGAGTATGCAAGTGTGTAT-TT-TCAT-GAAGACACCTTCACAT-ACCAGGAAGAA 312
|| ||||||| | || ||||| || |||| ||| |||||||||| | || ||||||||
Sbjct 263 TAGTAGAGTATAC-AG-ATGTATCTTCTCATGGAA-ACACCTTCAC-TAACGAGGAAGAA 318
Query 313 ACGGTCGAGCAG-TCCTGG-GCCTCTTGGTTACAGTCATCGACCAATGAACAATCTGAAA 370
||| | |||| | | |||| | | ||||||||||||||||||||||||||||||||||
Sbjct 319 ACGTTGGAGC-GTTACTGGAGAAAC-TGGTTACAGTCATCGACCAATGAACAATCTGAAA 376
Query 371 CAGCATCACAAGAAGAGTATACAAATGTATCTTCTCATGAAGACACCTTCACATATGAGG 430
||| ||||||||||||||||||||||| ||||||||||| || |||||||| || ||||
Sbjct 377 CAGGATCACAAGAAGAGTATACAAATGCATCTTCTCATGGAGGCACCTTCATTTACGAGG 436
Query 431 AAGAAACGCTCGAGCAGCACTGGACCAACTGGTTACAGACATTGACCAATGAACAATCTG 490
|||||||| | |||||| | |||| |||||||||||| ||| ||| |||||||||| ||
Sbjct 437 AAGAAACGTTGGAGCAGTATTGGAGAAACTGGTTACAGTCATCGACAAATGAACAATTTG 496
Query 491 AAAGAGCAC-CACAAGAAGAGTATACAAATGTATATTCTCATGAAAACACCTTCACATAC 549
||| || | ||| |||||||||||||||| || |||||||| | ||| |||||| |||
Sbjct 497 AAACAG-AGTCACTAGAAGAGTATACAAATCCATCTTCTCATGGAGACATCTTCACTTAC 555
Query 550 GAGGAACTATTGAACCTCACTGAAC-AAGCAGGAAATGTAGGCACTGGTTTAACCGTGGA 608
|||||| |||||| | ||||||| | || ||||| ||| | |||||||||||| || |||
Sbjct 556 GAGGAATTATTGAGCATCACTGA-CGAAACAGGAGATGAACGCACTGGTTTAAGCGAGGA 614
Query 609 AGTCATTGATGAGAATCTAAGAAGAAGGAAGTATGAAAAGCGTAGTGACGATGAAACGGA 668
||| |||||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
Sbjct 615 AGTGATTGATGAGAATCTAATAAGAAGGAAATATGAAAAGCGTAGCGACGATGAAACGAA 674
Query 669 GATATGTGTGATCTGTCAGGAGAAATTGGAGGACAATGAAGAAGCTTCGAAACTGGGATG 728
|| |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 675 GAGATGTGTGATCTGTCAGCAGAAATTGAAGGACAATGAAGAAGTTTCGAAACTGGGATG 734
Query 729 TGGGCATGACTTTCACTTCG-AGTGCATCAAGCAGTGGCTGATGGTCAAGAACATGTGTC 787
|||||||||||||||||||| | ||||||||| | ||||| ||||||| ||||| |||||
Sbjct 735 TGGGCATGACTTTCACTTCGGA-TGCATCAAGAATTGGCTAATGGTCACGAACAAGTGTC 793
Query 788 CTCTTTGCAATCAAGAAGTCGTTTAA 813
|||||||||| | |||||||||||||
Sbjct 794 CTCTTTGCAACCGAGAAGTCGTTTAA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39584507836
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5