BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332869

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67010.1 | Symbols:  | Integrase-type DNA-binding superfamil...   599    7e-171


> AT5G67010.1 | Symbols:  | Integrase-type DNA-binding superfamily 
protein | chr5:26749058-26749616 REVERSE LENGTH=489
Length=489

 Score =  599 bits (324),  Expect = 7e-171
 Identities = 402/440 (91%), Gaps = 3/440 (1%)
 Strand=Plus/Plus

Query  1    ATGGACTATTCAAAAAATGTTCAAAACGAAAATTTCACCCTTGTTTCACAACCTTCTTAT  60
            ||||| |||||| |||||||||||||| |||||||||||| | ||||||||||| || | 
Sbjct  1    ATGGATTATTCAGAAAATGTTCAAAACAAAAATTTCACCCCTATTTCACAACCTCCTAAC  60

Query  61   TTGACAAGAGATCAAGAGCATGGTATCATGGTCTCTACTTTGCGACAAGTGATATCCAAC  120
            ||||||||||| ||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct  61   TTGACAAGAGACCAAGAACATGCTATCATGGTTTCTACTTTGCGACAAGTGATATCCAAC  120

Query  121  ACTGGAGGTGATACGTCATCATCTCACTGGATTGC---AAGTGAAGCTCTTCCACCTCCG  177
            ||||||||||||||||||||||||||||  |||||   |||||| |||||||||||| ||
Sbjct  121  ACTGGAGGTGATACGTCATCATCTCACTACATTGCTGCAAGTGAGGCTCTTCCACCTTCG  180

Query  178  GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCGGTTGCTACGGGTGCGCATTCCCACGG  237
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct  181  GACGCTGGCCCTTGTCCTCTTTGCGGCGTCACCAGTTGCTACGGGTGCGCATTCCCACAG  240

Query  238  CATGAAGAGGTAAAGAAGGAGAAAAAACACAAAGGAGTGAGGAAGAAGCCATCAGGAAAA  297
            ||||||||| | ||| ||||||| || || ||||||||||||||||||||||||||||||
Sbjct  241  CATGAAGAGATTAAGCAGGAGAAGAAGCATAAAGGAGTGAGGAAGAAGCCATCAGGAAAA  300

Query  298  TGGTCTGCGGAAATATGGGATCCGAGTATGAGAGCAAGGAGGTGGCTTGGAACGTTTCCA  357
            ||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||||| 
Sbjct  301  TGGTCGGCGGAAATATGGGATCCGAGTACAAGAACAAGGAGGTGGCTTGGAACGTTTCCG  360

Query  358  ACGGCGGAGATGGCAGCGCATGCTTACGATGAGGCAGCGGCTGAGCTTGTTGGAAAAAGA  417
            ||||| |||||||||||| |||||||||||||||||||||||| |||||| | |||||||
Sbjct  361  ACGGCAGAGATGGCAGCGGATGCTTACGATGAGGCAGCGGCTGCGCTTGTCGAAAAAAGA  420

Query  418  TCAGCGAGACGTGGCACAAA  437
            ||||||||||||||| ||||
Sbjct  421  TCAGCGAGACGTGGCTCAAA  440



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5