BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332870
Length=492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67000.1 | Symbols: | Integrase-type DNA-binding superfamil... 327 4e-89
AT2G20350.1 | Symbols: | Integrase-type DNA-binding superfamil... 204 8e-52
> AT5G67000.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:26746677-26747281 REVERSE LENGTH=605
Length=605
Score = 327 bits (177), Expect = 4e-89
Identities = 352/428 (82%), Gaps = 46/428 (11%)
Strand=Plus/Plus
Query 68 AAGAGCACGAGATCATGGTCTCTGCTCTGCAACAAGTGATATCTAACTCCAGAGCT---G 124
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
Sbjct 217 AAGAGCACGAGATCATGGTCTCTGCTCTGCGACAAGTGATATCTAACTCCGGAGCTGACG 276
Query 125 ACGCGTCATCATCAAATTTGATC-GCAAGCGAAGGTC-TTTCGCCTCCAGACGCTGGCCC 182
|||||||||||||||| |||||| | | | || | | || |||||||||| | | |
Sbjct 277 ACGCGTCATCATCAAACTTGATCATC-A-C-AA-G-CGTTCCGCCTCCAGA--C--G--C 325
Query 183 TTTTGGAAGCCCATATTCTAATAGTCCTCTCTGTCGCATCATCGGTTGCGAAGGCTGCAC 242
| | | || || | ||||||||||| || || ||||||| | ||||||||
Sbjct 326 ---T-G--G-CC-----CT--T-GTCCTCTCTGTGGCGTCGCCGGTTGCTACGGCTGCAC 370
Query 243 ATTACAACGGCCGCACCGAGAGATAGAGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAA 302
|||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||
Sbjct 371 ATTACAACGGCCGCACCGAGAGGTAAAGAAGGAGAAGAAATACAAAGGAGTAAGGAAAAA 430
Query 303 GCCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGTTCGAAATCAAGGAAGTGGCT 362
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 431 ACCATCGGGTAAATGGGCGGCGGAGATATGGGATCCGAGATCGAAATCAAGGAGGTGGCT 490
Query 363 TGGAACGTTTCTAACGGCAGAGACGGCGGCG-AGTTCTTACGATGAGGCGGCGCGGAGCT 421
|||||||||||| ||||| |||| |||||| | | ||||| |||| |||||| | ||
Sbjct 491 TGGAACGTTTCTTACGGCGGAGATGGCGGCACAAT-CTTACAATGATGCGGCG-G---CT 545
Query 422 TGTCAGGAGAACATCAGCAAGACGTGGCAAAACGAACGGAGGAAG-AATTAAACGGCGGC 480
| || | | |||||||||||| ||||| ||||||| ||| |||||||||||||
Sbjct 546 -G--AGTAT--CG--AGCAAGACGTGGTAAAACAAACGGAG-AAGGAATTAAACGGCGGT 597
Query 481 GGAGATGA 488
||||||||
Sbjct 598 GGAGATGA 605
> AT2G20350.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr2:8784769-8785396 FORWARD LENGTH=477
Length=477
Score = 204 bits (110), Expect = 8e-52
Identities = 172/200 (86%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 269 AGAAGGAGAAGAAATACAAAGGAGTGAGGAAAAAGCCATCGGGTAAATGGGCGGCGGAGA 328
||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 245 AGAAGGAGAAGAAGCACAAAGGAGTGAGGAAAAAACCATCAGGTAAATGGGCGGCGGAGA 304
Query 329 TATGGGATCCGAGTTCGAAA-TCAAGGA-AGTGGCTTGGAACGTTTCTAACGGCAGAGAC 386
||||||||||||||| |||| | ||||| | |||||||||||||||| ||| || ||||
Sbjct 305 TATGGGATCCGAGTTTGAAAGT-AAGGAGA-TGGCTTGGAACGTTTCCAACAGCGGAGAT 362
Query 387 GGCGGCGA-GTTCTTACGATGAGGCGGCG-CGGAGCTTGTCAGGA-GAACATCAGCAAGA 443
|||||| | | ||||| | || |||||| | ||| ||||| ||| ||| ||||||||||
Sbjct 363 GGCGGCTAAGG-CTTACAACGATGCGGCGGCTGAGTTTGTC-GGAAGAAGATCAGCAAGA 420
Query 444 CGTGGCA-AAACGAACGGAG 462
||||||| ||| ||||||||
Sbjct 421 CGTGGCACAAA-GAACGGAG 439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23459346649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5