BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332873

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G66970.1 | Symbols:  | P-loop containing nucleoside triphosp...   710    0.0  


> AT5G66970.1 | Symbols:  | P-loop containing nucleoside triphosphate 
hydrolases superfamily protein | chr5:26740445-26741125 
REVERSE LENGTH=528
Length=528

 Score =  710 bits (384),  Expect = 0.0
 Identities = 487/535 (91%), Gaps = 14/535 (3%)
 Strand=Plus/Plus

Query  1    ATGGCGTTGGAGGAACTGAGAGGTCGGATAGGCCGGTCCTTTGAAGAGATGCATAAAACA  60
            ||||||||||||||| |||| ||||||||||||||||| |||||||||||| ||||||||
Sbjct  1    ATGGCGTTGGAGGAAGTGAGGGGTCGGATAGGCCGGTCTTTTGAAGAGATGAATAAAACA  60

Query  61   AGCAACAAGGATTGGATGAGACTGAAGAGTTGTTTGAACGAGATCACATGCGCTTTGCTT  120
            ||||||| ||| || | || |||||||||||| |||||||||||||||||||||||||||
Sbjct  61   AGCAACATGGACTGCACGAAACTGAAGAGTTGCTTGAACGAGATCACATGCGCTTTGCTT  120

Query  121  GACGCCGATTTTCCTAGATTGGCCGTGGATGAGATTGAGATGAAAAGTCAGGAAATTATC  180
            ||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  121  GACGCCGATATTCCTAGATTGGCCGTGGATGAGATTGAGACGAAAAGTCTGGAAATTATC  180

Query  181  AATCTCCCTAGGGCGTCCAAGAAGAAGGGCAAACTAATCTACGA-GGTGATGTTAGCTA-  238
            ||||| |||| |||| |||||||||||||    ||||||||| | | |||||||| | | 
Sbjct  181  AATCTGCCTAAGGCGCCCAAGAAGAAGGGTGCCCTAATCTAC-ATGATGATGTTA-C-AG  237

Query  239  -AGCTCTCTAGTACGCTAGATCCGGGAAAATCTGCACTCATCCGGGGAAAGCGTGAACCT  297
             |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct  238  GAGCTCTCTAGTAAGCTAGATCCGGGAAAATCTGCACTCATTCGGGGAAAGCTTGAACCT  297

Query  298  AGCATAGTCATGTTCATCGGATTACGAGGTGTTGACAAGACCAAAACGTGTGCCATGTAT  357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  298  AGCATAGTCATGTTCATCGGATTACGAGGTGTTGACAAGACCAAAACGTGTGCCAAGTAT  357

Query  358  GCTCGTTACCACCGGAGGAAGGGATTCAGACCAGCTTTAGTGTGTGCTGATACTTTCAGG  417
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  358  GCTCGTTACCACCGGAAGAAGGGATTCAGACCAGCTTTAGTGTGTGCTGATACTTTCAAG  417

Query  418  ATT-GATGCTTTTGTCCGGCTCAACAAGGCTGCGAAAGATGAGGTTCCAGTTTACGGAAG  476
             || |||||||||||||| |||||||||||||| |||||||||||||||||||||| |||
Sbjct  418  -TTCGATGCTTTTGTCCGTCTCAACAAGGCTGCCAAAGATGAGGTTCCAGTTTACGCAAG  476

Query  477  AG-AGAGGAT-T-TTGAAGCATTTGAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  528
             | | |  || | |||| | |||| ||||||||||||||||||||||||||||||
Sbjct  477  -GTATAT-ATATATTGA-GTATTTCAAGCTGAAGCTTTTGTCAGGAGTCTCTTGA  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5