BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332886
Length=1578
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66820.1 | Symbols: | unknown protein; Has 35333 Blast hits... 1936 0.0
> AT5G66820.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:26689056-26691114
FORWARD LENGTH=1605
Length=1605
Score = 1936 bits (1048), Expect = 0.0
Identities = 1411/1583 (89%), Gaps = 38/1583 (2%)
Strand=Plus/Plus
Query 1 ATGTTCTTTTCAGACATGGAGCGAAAAACTCTAGCGATTACGCCTCCTTCCTTTTTCTTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 42 ATGTTCTTTTCAGACATGGAGCGAAAAACCCTAGCGATTACGCCTCCTTCCTTCTTCTTC 101
Query 61 CATTTTGGAGGAGCATCATTTGGTTCATCAAAGGCATTTCATTGTCTTCTCCTTCTCTCA 120
|| ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 102 CACCTTGGAGGAGGAGCATTTGGTTCATCAAAGGCGTTTCATTGTCTTCTCCTTCTCTCA 161
Query 121 TGTCTATTACTTTCATCAGTTAATACATTGCATAACTTAGCTGAATATGGCTACAACAAT 180
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||| |
Sbjct 162 TGTCTATTGCTTTCATCAGTCAATACATTGCATAACTTAGCTGAATATGGTTACAACACT 221
Query 181 GGTTCTGCTGCTAAGGAGTTTCAAGGCTTTATTAATGGTGAAGATTCTGAGAGTATAACA 240
||||||||||||| ||||||||| ||||||||||||||||||||||||| |||| || ||
Sbjct 222 GGTTCTGCTGCTATGGAGTTTCAGGGCTTTATTAATGGTGAAGATTCTGGGAGTGTAGCA 281
Query 241 ATCCA-AAAGACAT-ACCAGAATGTTTGTCCCAATTCAGAGTTGTTTTGTTTCCTTCCAG 298
||||| ||| | | |||||||||||||||| | |||| || |||||||||||||| |||
Sbjct 282 ATCCAGAAA-TC-TGACCAGAATGTTTGTCCTAGTTCACAGCTGTTTTGTTTCCTTTCAG 339
Query 299 CTTTAGGATCAAAGAATCGGTATGATCCATTTGTACCCTTTTTTGGGTTGCCTTGTCCTA 358
||||||||||| ||||||||| ||||||||||| | |||| ||||||| |
Sbjct 340 CTTTAGGATCAGAGAATCGGTCTGATCCATTTG----------T--GTTGGCTTGTCCCA 387
Query 359 AAGAATCACGGAGTAGCTCTGTTCTGATCAGAAAAAATCTATCTAGTGTTATGTGGCTAT 418
||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||
Sbjct 388 AAGAATCACGGAGTAGCTCTGCTCTGATCAGAAAAAATCTATCTGGTGTTGTGTGGCTAT 447
Query 419 CTCTTAAGCATGTCCACATCATAGAGTTTCAGTCATTTACTGGATTCTTTCACATAGGAG 478
|||| |||| |||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 448 CTCTGAAGCCTGTCCACATCATAGAGTTTCAGCCATTTACTGGATTCTTTCACATTGGAG 507
Query 479 ACACTTGTTACGAGCCTATGTCGAATGAACTCTATACTAAGAAGATCACAAGGGAGTTAA 538
|||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||
Sbjct 508 ACACTTGTTACGAGCCTATGTCCAAAGAGCTCTATACTAAGAAGACCACAAGGGAGTTAA 567
Query 539 GTATTACTACAGTTTCGGGAAAACAGTGTGGAAGAAATTGTTTTATGGTGAACCAT-CAG 597
||| | ||| ||||| |||||||| |||||| ||||| ||||||||||||||||| ||
Sbjct 568 GTA-T--TACGGTTTCAGGAAAACAATGTGGAGGAAATGGTTTTATGGTGAACCATCCA- 623
Query 598 TGTGAAGGATTTTCATTAGAACCAAGGTATTCCATCAAGTTTCTCTATTTCTACCAGACT 657
|||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||| |
Sbjct 624 TGTGAAGGATTTTCATTAGAACCAGGGGATTCCATAAAGTTTCTCTTTTTCTACCAGAGT 683
Query 658 GAACTCTCTTGGGCATATGGAGTTGTTGTTTTTGCAATACCTATGAAGGCCACTGCACCT 717
|||||||||||||||| |||||||| |||||||||| ||||||||||||| || ||||||
Sbjct 684 GAACTCTCTTGGGCATCTGGAGTTGCTGTTTTTGCAGTACCTATGAAGGCGACCGCACCT 743
Query 718 GTTTTGATGCTTAATCTCTGCAAAAAGCCGGTCTTTTGGGTGCGAACAAAGAAATTCTCA 777
||||||||||||| ||||| |||||| ||||||||||||||||| || ||||||||| ||
Sbjct 744 GTTTTGATGCTTAGTCTCTACAAAAAACCGGTCTTTTGGGTGCGGACGAAGAAATTCGCA 803
Query 778 ATTGCGGTTCTTATTGCTGCTGCTCTACTCATTTTGATATTTTGCTTCAATGATCACTTC 837
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 804 ATTGCGGTTCTTATTGCTGCAGCTCTACTCATTCTGATATTTTGCTTCAATGATCACTTC 863
Query 838 ATTGAGGAGAACAATAAGGGAAACCATCGCAACCACATGGAGTTGAGAGAAGTGGAGAAA 897
|| ||||||||||| ||| ||||| || ||||||||||||||| ||||||||| ||||||
Sbjct 864 ATCGAGGAGAACAACAAGAGAAACAATAGCAACCACATGGAGTCGAGAGAAGTTGAGAAA 923
Query 898 CCTTCTACGATCAAAATCTCCCCTGCAATGAATTATGTGCTAAGATCCATAAGCAAAGAA 957
|| |||||||||| ||| ||||||| |||| ||| | |||||||||||||||||||||||
Sbjct 924 CCATCTACGATCACAATATCCCCTGAAATGGATTCTCTGCTAAGATCCATAAGCAAAGAA 983
Query 958 AGCCTCCAAGTGTTCGATGAGGTTCCCAAGAGCATAAAGCCAGTTGCTTCTTCT-GTTTC 1016
||||| ||||||||||||||||||||||||| || | || || | || | ||| |
Sbjct 984 AGCCTGCAAGTGTTCGATGAGGTTCCCAAGAACAGCA-GC-AGC-G-TTAAGCCAGTTGC 1039
Query 1017 GTCTTC-C-C-ATGAAGAATCATCAGAAGATGTTAATCTCACTGTAAAGACTGCGATAGA 1073
||||| | | | |||||| ||||||||| ||| ||||||||||||||||| |||| |||
Sbjct 1040 TTCTTCACACGAAGAAGAAGCATCAGAAGCTGTGAATCTCACTGTAAAGACAGCGAAAGA 1099
Query 1074 CAAGAAGAGACGCCGTAACAGGaaaaaaaaGAAAGGAGGAATCAACAGATTAACACCCGA 1133
||||||||| |||||||||| |||||| |||||||||||||||||| |||||||||| ||
Sbjct 1100 CAAGAAGAGGCGCCGTAACAAGAAAAAGAAGAAAGGAGGAATCAACGGATTAACACCAGA 1159
Query 1134 GTACACAAATGTTTCAAGCAGTCACATTGGAAACTCAACTCCTAGGTCTCCAATATCACC 1193
|| |||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1160 GTGCACAGATGTTTCAAGCAGTTACAGCGGAAACTCAACTCCTAGGTCTCCAATATCACC 1219
Query 1194 AGAGCCACCTACTACTACTCAAGCCACAACGAAGCCCGTGAACCCTCCTA--AA-CCGGT 1250
||| |||||||||||| | ||||| ||||||||| || || ||||||| || |||||
Sbjct 1220 AGAACCACCTACTACT-C--AAGCCGCAACGAAGCTAGTAAAGCCTCCTACTAAACCGGT 1276
Query 1251 TCTATCGCACTCAACAACATTTCCGGTTTCAGGGGTTAAGTCAAAGATTATACAACAAAG 1310
|||||||||||| |||| ||||||||||||||||||||||||| ||| ||||||| |||
Sbjct 1277 CCTATCGCACTCAGCAACGTTTCCGGTTTCAGGGGTTAAGTCAATGATCATACAACGAAG 1336
Query 1311 CTTACGGGCTCCAAATGTGAGAGCTCCTAGTGCGAAATCAAGAACCGGGGTGAAAGAAGA 1370
|| || |||||||||||||||||| ||| | |||||||||||||||| |||||||||||
Sbjct 1337 CTCACTGGCTCCAAATGTGAGAGCACCTGGAGCGAAATCAAGAACCGAAGTGAAAGAAGA 1396
Query 1371 TAAAGCGAAAGAGTATATGTACTATGATATTTGGGGATATCACTTGACGGGGCTTCATTT 1430
|||||||||||||||| |||||||||||| |||||| |||||||||| |||||| ||||
Sbjct 1397 GAAAGCGAAAGAGTATAGGTACTATGATATCTGGGGAGATCACTTGACAGGGCTTAATTT 1456
Query 1431 GATGGATAAGTTCAAGGAAGTGAGAGAAGGTAAAAGCTCAAGCTTTGATGGAGAGGAGTG 1490
|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1457 GATGGATAAGTTAAAGGAAGTGAGAGAAGGTAAAAGCTCAGGTTTTGATGGAGAGGAGTG 1516
Query 1491 TGAGAGTTTCTTTGTTAATAAGGGTCCTCATAACTTGTTTGCAGACTCTCATACCAGATT 1550
|||||||||||||||||| ||||||||| |||||||| ||||||||||| ||||| ||
Sbjct 1517 TGAGAGTTTCTTTGTTAA---GGGTCCTCAGAACTTGTTAGCAGACTCTCACACCAGGTT 1573
Query 1551 TGTAAGTTTCTGCAACCAATGGG 1573
|||||||||||| ||||||||||
Sbjct 1574 TGTAAGTTTCTGTAACCAATGGG 1596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77911245840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5