BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg332898 Length=696 Score E Sequences producing significant alignments: (Bits) Value AT5G66700.1 | Symbols: HB53, HB-8, ATHB53 | homeobox 53 | chr5:... 1085 0.0 > AT5G66700.1 | Symbols: HB53, HB-8, ATHB53 | homeobox 53 | chr5:26634320-26635885 FORWARD LENGTH=896 Length=896 Score = 1085 bits (587), Expect = 0.0 Identities = 661/695 (95%), Gaps = 11/695 (2%) Strand=Plus/Plus Query 1 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 87 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 146 Query 61 ACGACCCAGA-CCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGGATCATCATC 119 |||||||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 147 ACGACCCA-ACCCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGG--------- 196 Query 120 AGGCGAAGGATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGCAAAGGTTCATCAGC 179 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 197 AGGCGAAGAATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGTAAAGGTTCATCAGC 256 Query 180 CACCAACGAAGAAGACGTGGCAGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 239 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 257 CACCAACGAAGAAGACGTGGCGGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 316 Query 240 TGAGCAAGTGCACATGCTCGAATATTGCTTCGGGAACGAGCACAAGCTAGAGTCAGGGAG 299 ||| |||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 317 TGAACAAGTGAACATGCTCGAATATAGCTTCGGGAACGAGCATAAGCTGGAGTCAGGGAG 376 Query 300 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGATCCGAGACAGGTGGCTGTTTGGTTCCA 359 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 377 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGACCCGAGACAGGTGGCTGTTTGGTTCCA 436 Query 360 GAACCGCCGTGCGCGGTGGAAGAACAAGAAACTCGAGGAAGAGTACGCCAAACTCAAGAA 419 |||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| || Sbjct 437 GAACCGCCGTGCACGTTGGAAGAACAAGAAACTAGAGGAAGAGTACGCCAAACTCAAAAA 496 Query 420 CCACCACGACACCGTCGTCCTCGGCCAATGTCAACTCGAGTCTCAGATATTGAAACTAAA 479 ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 497 CCACCACGACAACGTCGTACTCGGCCAATGCCAACTCGAGTCTCAGATATTGAAACTAAC 556 Query 480 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTCTCGGAACGACTTGAAGAAAT 539 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 557 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTGTCGGAACGACTTGAAGAAAT 616 Query 540 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACGATGCACCGACTGATTT 599 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 617 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACAATGCACCAACTGATTT 676 Query 600 CGAGCTTGCCCCGGAAACTAATTATACCATCCCATTCTATATGTTAGATAATAATTATTT 659 |||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||| Sbjct 677 CGAGCTTGCCCCGGAAACTAATTATAACATCCCGTTTTATATGTTAGATAATAATTATTT 736 Query 660 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 694 ||||||||||||||||||||||||||||||||||| Sbjct 737 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33707112637 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5