BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332898
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66700.1 | Symbols: HB53, HB-8, ATHB53 | homeobox 53 | chr5:... 1085 0.0
> AT5G66700.1 | Symbols: HB53, HB-8, ATHB53 | homeobox 53 | chr5:26634320-26635885
FORWARD LENGTH=896
Length=896
Score = 1085 bits (587), Expect = 0.0
Identities = 661/695 (95%), Gaps = 11/695 (2%)
Strand=Plus/Plus
Query 1 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 ATGGATCATGGTAGGTTAATGGATGATCAAATGATGCTAGGCTCTCAAGTGTACCCCTAC 146
Query 61 ACGACCCAGA-CCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGGATCATCATC 119
|||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 147 ACGACCCA-ACCCCAAAATTCACACTGCATCATCGTTAACCAGATCGATGG--------- 196
Query 120 AGGCGAAGGATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGCAAAGGTTCATCAGC 179
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 197 AGGCGAAGAATCAAAACCGGTGAAGCGGAGGAGGAAGAGGAGGAGTAAAGGTTCATCAGC 256
Query 180 CACCAACGAAGAAGACGTGGCAGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 257 CACCAACGAAGAAGACGTGGCGGAGATCGGAGGGATGTTGAGGAAGAGGAAGTTGACCGA 316
Query 240 TGAGCAAGTGCACATGCTCGAATATTGCTTCGGGAACGAGCACAAGCTAGAGTCAGGGAG 299
||| |||||| |||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 317 TGAACAAGTGAACATGCTCGAATATAGCTTCGGGAACGAGCATAAGCTGGAGTCAGGGAG 376
Query 300 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGATCCGAGACAGGTGGCTGTTTGGTTCCA 359
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 377 GAAGGAGAAGATCGCCGGAGAGTTAGGTCTTGACCCGAGACAGGTGGCTGTTTGGTTCCA 436
Query 360 GAACCGCCGTGCGCGGTGGAAGAACAAGAAACTCGAGGAAGAGTACGCCAAACTCAAGAA 419
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 437 GAACCGCCGTGCACGTTGGAAGAACAAGAAACTAGAGGAAGAGTACGCCAAACTCAAAAA 496
Query 420 CCACCACGACACCGTCGTCCTCGGCCAATGTCAACTCGAGTCTCAGATATTGAAACTAAA 479
||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 497 CCACCACGACAACGTCGTACTCGGCCAATGCCAACTCGAGTCTCAGATATTGAAACTAAC 556
Query 480 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTCTCGGAACGACTTGAAGAAAT 539
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 557 AGAACAATTGAGTGAAGCTCAAAGTGAAATTCGAAAACTGTCGGAACGACTTGAAGAAAT 616
Query 540 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACGATGCACCGACTGATTT 599
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 617 GCCAACCAACAGTTCAAGTTCATCGCTTTCTGTTGAAGCCAACAATGCACCAACTGATTT 676
Query 600 CGAGCTTGCCCCGGAAACTAATTATACCATCCCATTCTATATGTTAGATAATAATTATTT 659
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 677 CGAGCTTGCCCCGGAAACTAATTATAACATCCCGTTTTATATGTTAGATAATAATTATTT 736
Query 660 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 694
|||||||||||||||||||||||||||||||||||
Sbjct 737 ACAAAGCATGGAGTATTGGGATGGTTTGTATGTAT 771
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5