BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332918
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1836 0.0
AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 555 5e-157
> AT5G66480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G50910.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr5:26544541-26546986 REVERSE LENGTH=1702
Length=1702
Score = 1836 bits (994), Expect = 0.0
Identities = 1229/1340 (92%), Gaps = 25/1340 (2%)
Strand=Plus/Plus
Query 1 ATGCCTACATTTTCTGCTGCCGCTTTGGATAGATCACTAAATTCAGGGGCTTCCGTATCT 60
|||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||||
Sbjct 172 ATGCCTACATTTTCTGCTGCCGCTTTGGGTAGATCACTAAATTCAGGGACGTCCTTATCT 231
Query 61 CGTGAATTTCCAAGCACATTGCATTCAAAGCCATCTACTTTGAACGATGAAAGTAAGCAA 120
|| |||||||||||||| |||| |||||||| |||| |||||| |||||||||||||||
Sbjct 232 AGTAAATTTCCAAGCACACTGCAGTCAAAGCCGTCTATTTTGAATGATGAAAGTAAGCAA 291
Query 121 CCTAAAGAAAAGACATTCACTCGTCCTCAGATGTCACCTTCTCTATACGCCACTCCTAAA 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 292 CCTAAAGAAAAGACATTCACTCGTCCTCAGATGTCACCTTCTCTATATGCCACTACTAAA 351
Query 181 GAAATCCCTCGTCCCAATTCGCCATCTTCCTATCCTCCATCTCCCTATATCATCAATCAC 240
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 352 GAAATCCCTCATCCCAATTCGCCTTCTTCCTACCCTCCATCTCCCTATATCATCAATCAC 411
Query 241 AAAGCACGTGGACCAGTTCTTTTCAAAAGGGACTCTGAGGTGGATGGGCCTTCTCACCCG 300
||||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 412 AAAGCTCGTGGGCCTGTTCTTTTCAATAGGGACTCTGAGGTGGATGGGCCTTCTCACCCG 471
Query 301 A-AAGCCCT-TGGTGAGGAAAAGATTCGTGGTAATGTAGATGTGGACGCTACTACCTCTT 358
| || ||| |||||||||||||||| ||||||||||||||||||| |||||| |||| |
Sbjct 472 ATAA--CCTCTGGTGAGGAAAAGATTAGTGGTAATGTAGATGTGGAGGCTACTGCCTCCT 529
Query 359 TGAGGAAGTCCACATCCCTATCATTTCCTAT---C-A-G----TGAGG-CGAT---AGCA 405
|||| |||||||||||||||||||||||||| | | | || || ||| | ||
Sbjct 530 TGAGCAAGTCCACATCCCTATCATTTCCTATCACCGAGGCTATTGCGGTGGATCACACCA 589
Query 406 GT-G-GATCACACCCAAGGTATCCCTGAACGTCCTGTTTGGGATTGCAGCCCCCCTCATG 463
| | | |||||||||||| |||| |||||||||||||||||||||||| ||||||| ||
Sbjct 590 ATGGTGTTCACACCCAAGGCATCCATGAACGTCCTGTTTGGGATTGCAGTCCCCCTCTTG 649
Query 464 GGACATTTTTGAACGAGAACTCGGGAAGAGATATCAGCAACGGTGGGATTGGAAGCAATA 523
||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||
Sbjct 650 GGACATTTTTGAACGAGAAGTCGGGAAGAGATATCAGCAATGGTGGGATTGGAAGTAATA 709
Query 524 TTGCTGCCAATACTTTAGAATGGAAAAGTTATTTATTGGAGCCGGTAAGAATAAAAGCAG 583
|||| ||| || |||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 710 ATGCTACCAGTAATTTAGAATGGCAAAGTTACTTATTGGAGCCGGTAAGAATAAAAGCAG 769
Query 584 ACAAGGAGCTTGAGTCTGAAAATTTCTATAACCCAGGTGTATCAGTAAGCTTCACTAGTA 643
|||||||||||||| |||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 770 ACAAGGAGCTTGAGCCTGAAAATTTCTATAACCCAGGTGAATTAGTAAGCTTCACAAGTA 829
Query 644 GCACAGAGGTAGAAGATATTGGAG-GAGCTGAAAGCTCACACAAAT-TTTCTTCACATGT 701
|||||||||||||||| || ||| ||||||||||||||||| | | || || |||||||
Sbjct 830 ACACAGAGGTAGAAGAT-TTCGAGAGAGCTGAAAGCTCACAC-AGTCTTGCTACACATGT 887
Query 702 TGGAGACTTTTATGATGCTTGCGATGAACTATCCACCGACAGTGGAATGCAGAGTTCAGT 761
|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 888 TGGAGAGTTTTATGATGCTTGCGATGAACTATCAACTGACAGTGGAATGCAGAGTTCAG- 946
Query 762 C-AACATCCTTGAATCTGAGCTGAGGGAGATAAGGTTGGGTTTACTAATGGAAATCGAGA 820
| |||| | ||||||||||| | |||||||| || ||||||||||||||||||||||| |
Sbjct 947 CTAACAACATTGAATCTGAGGTAAGGGAGATGAGATTGGGTTTACTAATGGAAATCGAAA 1006
Query 821 GGAGAAGGCAGGCAGAGGAGACTCTAGAGCAAATGCAAGTTCATTGGCGGAGGCTCCGTG 880
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GGAGGAGGCAGGCAGAGGCGACTCTAGAGCAAATGCAAGTTCATTGGCGGAGGCTCCGTG 1066
Query 881 ACCAGTTGGCCGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGCAGCCAATACAGCA 940
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1067 ACCAGTTGGCCGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGAAGCCAATACAGCA 1126
Query 941 TGAACCTAGCTGATGAGATACGTTGTCAACTTGAGGTCACCAGGTTTGTCTCTGACTCAC 1000
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1127 TGAACCTAGCTGATGAGCTACGTTGTCAACTTGAGGTCACCAGGTTTGTCTCCGACACAC 1186
Query 1001 TAGGCAGTGACTTGGCCAAGGCAGAGGTAGAGATGGAGATGGAAGCTGAGCTCGAAGCTA 1060
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TAGGCAGTGACTTGGCCAAGACAGAGGTAGAGATGGAGATGGAAGCTGAGCTCGAAGCTA 1246
Query 1061 AGAACTTTGAAATCACACGGTTGTCTGACCGTCTTCACTATTATGAGACGGTGAACCAGG 1120
|||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1247 AGAACTTTGAAATCACCCGGTTGTCTGACCGTCTTCATTATTACGAGACTGTGAACCAGG 1306
Query 1121 AAATGTCCCAGCGCAACCAAGAGGCTATAGAGGTGGCAAGGCGCGACGGGCAAAAGAAAA 1180
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||
Sbjct 1307 AAATGTCCCAGCGCAACCAAGAGGCCATAGAGGTGGCAAGGCGAGACGGGCAAAAGAGAA 1366
Query 1181 AGAGGAGGCAGAGGTGGATTTGGGGATCAATTGCTGCAACCATCACGCTCGGGAGTGGAG 1240
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1367 AGAGGAGGCAGAGGTGGATTTGGGGATCAATAGCTGCAACCATCACACTCGGGAGTGGAG 1426
Query 1241 TCTTGGCTTGGTCGTACCTTCCACCTGGAATTTTATCATCGGATGAGGCTCAACATCAGC 1300
||||||| |||||||||||||| || ||||| |||||||| ||||| ||||||| |||||
Sbjct 1427 TCTTGGCCTGGTCGTACCTTCCTCCCGGAATGTTATCATCAGATGAAGCTCAACCTCAGC 1486
Query 1301 CGTCTCCAAAAGATTCATAA 1320
|||||||||||||||||||
Sbjct 1487 TGTCTCCAAAAGATTCATAA 1506
> AT3G50910.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G66480.1);
Has 76 Blast hits to 75 proteins in 28 species: Archae - 0;
Bacteria - 10; Metazoa - 7; Fungi - 2; Plants - 49; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:18919513-18922238
FORWARD LENGTH=1861
Length=1861
Score = 555 bits (300), Expect = 5e-157
Identities = 573/702 (82%), Gaps = 29/702 (4%)
Strand=Plus/Plus
Query 575 TAAAAGCAGACAAGGAGCTTGAGTCTGAAAATTTCTATAACCCAGGTGTATCAGTAAGCT 634
||||| ||||||||||| |||||| ||| |||||||| ||||||||| ||||| |||||
Sbjct 893 TAAAA-CAGACAAGGAGAGTGAGTCAGAAGATTTCTATGACCCAGGTGAATCAGCAAGCT 951
Query 635 TCACTAGTAGCACAGAGGTAGAAGAT-AT--TGGAGGAGCTGAAAGCTCACACAA-ATTT 690
|||| |||| |||||| ||||| | | || ||| ||| | ||||| ||||| || | ||
Sbjct 952 TCACAAGTAACACAGACGTAGAGGGTGATGCTGG-GGA-C-GAAAGTTCACA-AAGACTT 1007
Query 691 TCTTCACATGTTGGAGACTTTTATGATGCTTGCGATGAACTATCCACCGACAGTGGAATG 750
| ||| ||| ||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1008 GCCACACCTGTGGGAGAGTTTTATGATGCTTGGGATGAACTATCAACCGACAGTGGAATG 1067
Query 751 CAGAGTTCAGTCAACATCCTTGAATCTGAGCTGAGGGAGATAAGGTTGGGTTTACTAATG 810
||||||||||| || | | | |||||||| | || ||||||||| || |||||||||||
Sbjct 1068 CAGAGTTCAGTTAATAACATCGAATCTGAATTAAGTGAGATAAGGCTGAGTTTACTAATG 1127
Query 811 GAAATCGAGAGGAGAAGGCAGGCAGAGGAGACTCTAGAGCAAATGCAAGTTCATTGGCGG 870
|||||||||| ||||| ||| |||||||| || | ||||| |||||| |||| |||| |
Sbjct 1128 GAAATCGAGAAGAGAAAACAGACAGAGGAGGCTTTGGAGCAGATGCAAATTCACTGGCAG 1187
Query 871 AGGCTCCGTGACCAGTTGGC-CGATGTGGGTATGTTCCTTCCTCTTGATCCCACCAGCAG 929
|| |||||||| ||| |||| | | |||||| ||||| ||||| ||||||| ||| ||
Sbjct 1188 AGACTCCGTGAGCAGATGGCTC-AGGTGGGTCTGTTCGTTCCTATTGATCCTACC-GCCT 1245
Query 930 CCA--ATACAGCATGAACCTAGCTGATGAGA-TACGTTGTCAACTTGAGGTCACCAGGTT 986
||| | ||| |||||| ||| | || || | |||| |||||||| ||| | | |||||
Sbjct 1246 CCACCA-ACAACATGAATCTATCAGAAGA-ACTACGCTGTCAACTCGAGATTGCGAGGTT 1303
Query 987 TGTCTCTGACTCACTAGGCAGTGACT-TGGCCAAGGCAGAGGTAGAGATGGAGATGGAAG 1045
|||||||||||| ||||||| | | |||| ||||| |||||||||||||||||||||
Sbjct 1304 TGTCTCTGACTCTTTAGGCAGAG-GTATGGCAAAGGCCGAGGTAGAGATGGAGATGGAAT 1362
Query 1046 CTGA-GCTCGAAGCTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTTCACTATTAT 1104
|| | ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1363 CT-ATGCTCGAAACTAAGAACTTTGAAATCACACGGTTGTCTGACCGTCTACACTACTAC 1421
Query 1105 GAGACGGTGAACCAG-GAAATGTCCCAGCGCAACCAAGAGGCTATAGAGGTGGCAAGGCG 1163
||| | |||||| || || ||||| || || |||||||| || |||||||||||| | ||
Sbjct 1422 GAGGCCGTGAAC-AGAGAGATGTCTCAACGAAACCAAGAAGCCATAGAGGTGGCACGACG 1480
Query 1164 CGACG-GGCAAAAGAAAAAGAGGAGGCAGAGGTGGATTTGGGGATCAATTGCTGCAACCA 1222
|| | |||| |||| ||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 1481 AGA-GAGGCAGAAGAGAAAGAAGAGGCAGAGATGGATTTGGGGATCAATTGCAGCAACCA 1539
Query 1223 TCACGCTCGGGAGTG-GAGTC-TTGGCTTGGTCGTACCTTCC 1262
| || || || || | | | | ||||| ||||| ||| ||||
Sbjct 1540 TTACTCTAGGAAGCGCG-G-CATTGGCATGGTCTTACATTCC 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5