BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332982

Length=156
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13395.1 | Symbols: DVL10, RTFL12 | ROTUNDIFOLIA like 12 | c...   206    6e-53


> AT4G13395.1 | Symbols: DVL10, RTFL12 | ROTUNDIFOLIA like 12 | 
chr4:7785687-7786113 REVERSE LENGTH=427
Length=427

 Score =  206 bits (111),  Expect = 6e-53
 Identities = 141/156 (90%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  1    ATGTCCAATCCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGCTTCGGAGATCGGTGT  60
            ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  76   ATGTCCAATTCTTCTCTTCCAACTAAACCGAACCGGAAAACCAGGTTCGGAGATCGGTGT  135

Query  61   TTACTAATGGCCAAACAGCAACGAACTCGGCTCTATATCCTACGGCGCTGCGTCTCAATG  120
            ||||| |||||||||||||||||||| || || || || || || || || ||||| |||
Sbjct  136  TTACTGATGGCCAAACAGCAACGAACCCGACTTTACATACTTCGACGATGTGTCTCCATG  195

Query  121  CTACTTTGCTGGCATGACCACTCTATTTCTGATTAG  156
            || ||||||||||| |||||||||||||||||||||
Sbjct  196  CTGCTTTGCTGGCACGACCACTCTATTTCTGATTAG  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6690079683


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5