BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332984
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13380.1 | Symbols: MEE56 | Heavy metal transport/detoxifica... 566 1e-160
AT1G57780.1 | Symbols: | heavy-metal-associated domain-contain... 100 1e-20
> AT4G13380.1 | Symbols: MEE56 | Heavy metal transport/detoxification
superfamily protein | chr4:7781782-7782553 FORWARD LENGTH=588
Length=588
Score = 566 bits (306), Expect = 1e-160
Identities = 510/603 (85%), Gaps = 36/603 (6%)
Strand=Plus/Plus
Query 1 ATGGTCACTGGTAATTTCAATTTAGAAAAGTTATTGAAAACTCTCAAGaaaaaaaCCGGT 60
||||| ||||||||||| ||||| ||||| |||||||||| ||||||||||||||| |||
Sbjct 1 ATGGTTACTGGTAATTTTAATTTGGAAAAATTATTGAAAAATCTCAAGAAAAAAACTGGT 60
Query 61 AAAAAGGCAGAAATCTTAATGATGAATGAGAAAGCTGA-TATGAA-A----G---AAAAT 111
||||||||||||||||| | |||||||||||||| ||| | ||| | | |||||
Sbjct 61 AAAAAGGCAGAAATCTTGACGATGAATGAGAAAGTTGAGAAAGAAGATGTTGTTCAAAAT 120
Query 112 ---G---ATGAACAAGAGACATTTACAGAGAAGAATGAAGAAGGTGATATAGTCCA-AGA 164
| |||||||||||||| ||||| |||||||||||||||||||||||||| | | |
Sbjct 121 GAAGCTAATGAACAAGAGACAGTTACAAAGAAGAATGAAGAAGGTGATATAGTCGACA-A 179
Query 165 AAAAGACAAAAATCCTGAAGTAGAAGAAAACATTGATACACCTGAAGCAAGTACAACAAA 224
|||||| | | |||||||||||||||||| ||||| | ||||||| ||||||||| |||
Sbjct 180 AAAAGATGAGACTCCTGAAGTAGAAGAAAAAATTGACAAACCTGAAACAAGTACAAGAAA 239
Query 225 AGTCGAAATTCATATCGCATTTCTATA-TGAGAAGTACGAGGAAGACATCGGAAAAGTTA 283
| | ||||| ||||| ||||||||| | ||||||||| |||| |||||||||||||||||
Sbjct 240 ACTTGAAATACATATAGCATTTCTA-AGTGAGAAGTATGAGGCAGACATCGGAAAAGTTA 298
Query 284 TTTCTAAATTCGAAGGGGTCAAAACATGTGTGGTCGACATAGAAAACCAAAAAA-TTGTA 342
||||||||||||||||||||||||||||| |||||| |||||||| |||||| ||||
Sbjct 299 TTTCTAAATTCGAAGGGGTCAAAACATGTAAGGTCGATGTAGAAAAC-AAAAAAGTTGTC 357
Query 343 ATAACTGGCGACTTTGATgaagagaaattattggaaa-aacttaag-aaaaagatgtgta 400
|| |||||||| ||||||||||||||||| | ||||| ||||| || ||||| ||| |||
Sbjct 358 ATCACTGGCGATTTTGATGAAGAGAAATTGT-GGAAAGAACTTGAGGAAAAA-ATGCGTA 415
Query 401 aaaggataaacaaagtggaaaag-aaaagaaaggaggaagaagccaaaatagttatagag 459
|||||||| |||| |||||||| |||| |||||| || ||| || || | | | |
Sbjct 416 AAAGGATAGTCAAAATGGAAAAGGAAAA-AAAGGACGATGAA-CC----TA-T-A-AC-G 465
Query 460 aaagatgaagaaattgaaaTGGATAGAGGTGTTTATATGTACCCAAATAGTGATGATGAG 519
||||||||||||| |||||| |||||||||||||||||| |||| | |||||||||||||
Sbjct 466 AAAGATGAAGAAAATGAAATTGATAGAGGTGTTTATATGAACCCTAGTAGTGATGATGAG 525
Query 520 AAAGAGGTGGCCAAATATATGATGTTTAGTGATGAAAATCCTAATGCATGTTCGATTTCG 579
||||| |||| | || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 526 AAAGAAATGGCTAGATGGATGATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTCG 585
Query 580 TAA 582
|||
Sbjct 586 TAA 588
> AT1G57780.1 | Symbols: | heavy-metal-associated domain-containing
protein | chr1:21403000-21404228 FORWARD LENGTH=795
Length=795
Score = 100 bits (54), Expect = 1e-20
Identities = 102/124 (82%), Gaps = 7/124 (6%)
Strand=Plus/Plus
Query 464 atgaagaaattga-aaTGGATAGAGGTGTTTATATGTACCCAAATAGTGATGATGAGAAA 522
|||||||||| || || ||||||| ||| | | | |||||| || |||| |||| |||
Sbjct 674 ATGAAGAAATCGACAA-GGATAGAAATGTATCTCTCAACCCAATTACTGATTATGA-AAA 731
Query 523 -GAGGTGGCCAAATA-TA-T-GATGTTTAGTGATGAAAATCCTAATGCATGTTCGATTTC 578
||| |||||||| | || | |||||||||||||||||||||||||||||||| |||||
Sbjct 732 GGAGATGGCCAAACATTATTACATGTTTAGTGATGAAAATCCTAATGCATGTTCTATTTC 791
Query 579 GTAA 582
||||
Sbjct 792 GTAA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27980419879
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5