BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332986
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1929 0.0
AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1147 0.0
> AT4G13360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr4:7775128-7777895 FORWARD
LENGTH=1465
Length=1465
Score = 1929 bits (1044), Expect = 0.0
Identities = 1193/1264 (94%), Gaps = 14/1264 (1%)
Strand=Plus/Plus
Query 4 ATCATCAAAACTTTGTCTCATCGCATCTTTTTCCCCAAATTCTCATC-AACCTTCTC-T- 60
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
Sbjct 12 ATCATCAAAACTTTGTCTCATCGCATCTTTTTCCCCAAATTCTCA-CAAACCTTCTCTTC 70
Query 61 TC---T-CACCAAACCCTCAGATTCTCAATCTCCGATCGTCGGAAATTCTCAGCGATGGC 116
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 TCAATTCCACCAAACCCTCAGATTCTCAATCTCCGATCGTCGGAAATTCTCAGCGATGGC 130
Query 117 CGGAGCTGGCGTCGACGATTTCGTTAAAGGAAATGTTTTTCCGAATGGTGTCGCTCTCAT 176
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 CGGAGCTGGCGTCGATGATTTCGTTAAAGGAAATGTTTTTCCGAATGGTGTCGCTCTCAT 190
Query 177 CACTCTCGATCGTACCAAAGCTCTCAACGCCATGAATCTT-GATATGGATATTAAGTATA 235
|||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 191 CACTCTCGATCGAACCAAAGCTCTCAACGCCATGAAT-TTAGATATGGATATAAAGTATA 249
Query 236 AAAGCTTTCTTGACGAATGGGAATCTGATCCGAGAGTCAAATGTGTTATCGTTGAAGGCA 295
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 250 AAAGCTTTCTTGATGAATGGGAATCTGATCCGAGAGTGAAATGTGTTATCGTTGAAGGAA 309
Query 296 GTACACCTCGAGCCTTTTGTGCAGGGATGGATATTAAAGGAGTTGCTGCAGAAATCCAGA 355
| ||| || | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 310 GCACATCTAGGGCCTTTTGTGCAGGGATGGATATTAAAGGAGTTGCTGCAGAAATCCAAA 369
Query 356 AGGACAAAAACACACCTCTTGTGCAAAAGGTGTTTACAGCAGAATATACTCTGATATGCG 415
||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
Sbjct 370 AGGACAAAAACACACCTCTTGTGCAAAAGGTATTTACAGCAGAGTATACACTGATATGTG 429
Query 416 CAATTGCTGGC-TACAAAAAGCCATATATCTCATTAATGGATGGTATAACAATGGGATTT 474
|||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 430 CAATTGCT-GCGTACAAAAAGCCATATATTTCATTGATGGATGGTATAACAATGGGATTT 488
Query 475 GGTCTAGGTCTTTCTGGACATGGTCGCTACCGTGTGATAACTGAGAGGACGGTTCTTGCC 534
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 489 GGTCTTGGTCTTTCTGGACATGGTCGCTACCGTGTGATAACAGAGAGGACGGTTCTTGCC 548
Query 535 ATGCCAGAAAATGGAATCGGCTTATTCCCAGATGTCGGCTTTTCATATATAGCAGCTCAT 594
||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 549 ATGCCAGAAAATGGAATTGGCTTGTTCCCTGATGTCGGGTTTTCATATATAGCAGCTCAT 608
Query 595 AGCCCTGGAGGAGGATCTGTTGGTGCTTATCTTGGTTTGACTGGAAAAAGGATCTCCACA 654
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 609 AGCCCTGGAGGAGGATCTGTTGGTGCTTATCTTGGTTTGACTGGTAAAAGGATCTCCGCG 668
Query 655 CCATCAGATGCATTGTTCGTTGGTCTTGGGACACATTATGTACCATCTGAAAAGCTAGCT 714
|||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 669 CCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCT 728
Query 715 TCATTAAAGGAAGCCATTTTGTCAGCTAACCTTTCTGAGGATCCTAATCAAGACATACAA 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 729 TCATTAAAGGAAGCCATTTTGTCAGCTAACCTTTCTGAGGATCCTAATCAAGACATCCAA 788
Query 775 GCAACTTTATCAAAATACAGCGGCAATCCTGAATCTGATGCCCATCTCAAATCGCTTTTG 834
||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||
Sbjct 789 GCAACTTTATCAAAATACAGCAGCAATCCTGAATCTGAGGCCCATCTCAAATCACTTTTG 848
Query 835 CCTCAAATAGAGTCAGCCTTTAGCTCAAATAAGTCTGTTAAGGAAACAATAGAAGAGCTC 894
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 849 CCTCACATAGAGTCAGCCTTTAGCTCAAATAAGTCTATTAAGGAAACAATAGAAGAGCTC 908
Query 895 AAAAAGTACCAGCGAAGCACTGAGCCTTCAGTTGTGGAATGGGCTAATGAGGCACTCAAA 954
||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 909 AAAAAGTACCAGCAAAGCACTGAGTCTTCAGTTGTAGAATGGGCTAATGAGGCACTCAAA 968
Query 955 GGTTTGGAAAAAGGAGCACCGTTCTCTCTTTATCTAACACAAAAGTACTTCTCCAATGTT 1014
|||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 969 GGTTTGGAAAAAGGAGCACCATTTTCTCTTTACCTAACACAAAAGTATTTCTCCAATGTT 1028
Query 1015 GCATCTGCTAAGGGTAAAACCGAAAACGAATTAGCAACACTTAATGGCGTGATGAAAACT 1074
|||| ||| ||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1029 GCATGTGCCAAGAGTAAACCCGAAAACGAATTAGCAACACTTAATGGCGTAATGAAAACT 1088
Query 1075 GAATACCGCATCGCACTAAGATCAGCCTTGCGTGGTGATTTTGCTGAAGGCGTTAGAGCA 1134
|| || ||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||
Sbjct 1089 GAGTATCGCATTGCACTAAGATCTGCCCTGCGTGGTGATTTTGCTGAAGGTGTTAGAGCA 1148
Query 1135 GTTTTGATTGACAAGGATCAGAACCCAAAATGGAACCCGGCAAGCATTGAAGAGGTAGAC 1194
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1149 GTTTTGATTGACAAGGATCAGAATCCAAAATGGAACCCGACAAGCATTGAAGAGGTAGAC 1208
Query 1195 GGAAACGAAGTAGAAGCTCTGTTTAAACCATTAAGTC-AGGAAGTGGAAGAGTTAAAAGT 1253
| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1209 GAAAACGAAGTGGAAGCTCTGTTTAAACCATTAAGTCCAG-AAGTGGAAGAGTTAAAAGT 1267
Query 1254 CTGA 1257
||||
Sbjct 1268 CTGA 1271
> AT3G24360.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr3:8839728-8842831 REVERSE
LENGTH=1393
Length=1393
Score = 1147 bits (621), Expect = 0.0
Identities = 1004/1185 (85%), Gaps = 41/1185 (3%)
Strand=Plus/Plus
Query 92 ATCGTCGGAAATTCTCAGCGATGGCCGGAGCTGG-CGTCGACGATTTCGTTAAAGGAAAT 150
|||||||||||||||||| |||||| || ||| | |||||| ||||| |||||||||
Sbjct 127 ATCGTCGGAAATTCTCAGTAATGGCC--AG-TGGAAG-CGACGAGTTCGTGAAAGGAAAT 182
Query 151 GTTTTTCCGAATGGTGTCGCTCTCATCACTCTCGATCGTACC-AAAGCTCTCAACGCCAT 209
|||| ||| ||||| || |||||||| ||||| ||||| ||| |||||||||||||||||
Sbjct 183 GTTTATCCAAATGGCGTTGCTCTCATTACTCTTGATCG-ACCTAAAGCTCTCAACGCCAT 241
Query 210 GAATCTTGATATGGATATT-AAGTATAAAAGCTTTCTTGACGAATGGGAATCTGATCC-G 267
|||||| || |||||| || ||||| |||||||| ||||| |||||||||| |||||| |
Sbjct 242 GAATCTAGAAATGGAT-TTGAAGTACAAAAGCTTGCTTGATGAATGGGAATATGATCCTG 300
Query 268 AGAGTCAAATGTGTTATCGTTGAAGGCAGTACACCTCGAGCCTTTTGTGCAGGGATGGAT 327
|||||||||||||| |||| ||||| || ||| |||| |||||||||||||| ||||||
Sbjct 301 -GAGTCAAATGTGTTGTCGTCGAAGGAAGCACATCTCGGGCCTTTTGTGCAGGAATGGAT 359
Query 328 ATTAAAGGAGTTGCTGCAGAAATCCAGAA-GGACAAAAACACACCTCTTGTGCAAAAGGT 386
||||||||||||| |||||| |||| || ||||||||| || ||||||||||||||||
Sbjct 360 ATTAAAGGAGTTGTTGCAGAGATCC-TAATGGACAAAAATACGTCTCTTGTGCAAAAGGT 418
Query 387 GTTTACAGCAGAATATA-CTCTGATATGCGCA-ATTGCTGGCTACA-AAAAGCCATATAT 443
|||||||| || |||| | ||||||||| | |||||||| |||| |||| ||||||||
Sbjct 419 ATTTACAGCTGAGTATAGC-CTGATATGC-AAGATTGCTGGATACAGAAAA-CCATATAT 475
Query 444 CTCATTAATGGATGGTATAACAATGGGATTTGGTCTAGGTCTTTCTGGACATGGTCGCTA 503
||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 476 CTCTTTAATGGATGGCATAACAATGGGATTTGGTCTTGGTCTTTCTGGACATGGACGCTA 535
Query 504 CCGTGTGATAACTGAGAGGACGGTTCTTGCCATGCCAGAAAATGGAATCGGCTTATTCCC 563
||| |||||||| ||||||||||| || || ||||||||||||||||||||||| || ||
Sbjct 536 CCGAGTGATAACAGAGAGGACGGTCCTCGCAATGCCAGAAAATGGAATCGGCTTGTTTCC 595
Query 564 AGATGTCGGCTTTTCATATATAGCAGCTCATAGCCCTGGAGGAGGATCTGTTGGTGCTTA 623
|||||| || ||||||||||| ||||||||||||||||| | ||||||||||||||||||
Sbjct 596 AGATGTTGGATTTTCATATATTGCAGCTCATAGCCCTGGCGAAGGATCTGTTGGTGCTTA 655
Query 624 TCTTGGTTTGACTGGAAAAAGGATCTCCACACCATCAGATGCATTGTTCGTTGGTCTTGG 683
|| ||| ||||||| | |||||| |||||||| ||||||||| |||| || ||||||||
Sbjct 656 CCTAGGTATGACTGGGAGAAGGATTTCCACACCTTCAGATGCACTGTTTGTGGGTCTTGG 715
Query 684 GACACATTATGTACCATCTGAAAAGCTAGCTTCA-TTAAAGGAAGCCATTTTGTCAGCTA 742
|||||||||||||||||||| |||||||| |||| | | | ||||||||||||||||||
Sbjct 716 GACACATTATGTACCATCTGGAAAGCTAGGTTCACTCAGA-GAAGCCATTTTGTCAGCTG 774
Query 743 ACCTTTCTGAGGAT-CCTAATCAAGACATACAAGCAACTTTATCAAAATACAGCGGCAAT 801
||||||| ||||| || || ||| |||| ||||||||||||||||| |||||| | ||
Sbjct 775 ACCTTTCCAAGGATCCCCAA-CAACACATCCAAGCAACTTTATCAAATTACAGCAGTGAT 833
Query 802 CCTGAATCTGATG-CCCATCT-CAAATCGCTTTTGCCTCAAATAGAGTCAGCCTTTAGCT 859
|||||| |||| | |||| || ||||| |||||||||||| ||||| ||||| ||||| |
Sbjct 834 CCTGAAACTGA-GTCCCACCTCCAAAT-GCTTTTGCCTCAGATAGAATCAGCTTTTAG-T 890
Query 860 -CAAATAAGTCTGTTAAGGAAACAATAGAAGAGCTCAAAAAGTACCAGC-GAAGCACTGA 917
|| |||||||||||||||||||||||||||||| ||||||| ||||| || ||| |||
Sbjct 891 GTAAGTAAGTCTGTTAAGGAAACAATAGAAGAGCTGAAAAAGTTCCAGCAGA-GCAGTGA 949
Query 918 GCCTTCAGTTGTGGAATGGGCTAATGAGGCACTCAAAGGT-TTGGAAAAAGGAGCACCGT 976
| ||||||||| |||||||||||||| ||| || |||| ||| ||||||| ||||| |
Sbjct 950 GGCTTCAGTTGCAGAATGGGCTAATGAAGCAGTCCAAGGCATTG-AAAAAGGGGCACCTT 1008
Query 977 TCTCTCTTTATCTAACACAAAAGTACTTCTCCAATGTTGCATCTGCTAAGGGTAAAACCG 1036
| |||||||| |||||||| |||||||||||||| ||||| | ||| ||||||||||||
Sbjct 1009 TTTCTCTTTACCTAACACACAAGTACTTCTCCAAAGTTGCTTGTGCCAAGGGTAAAACC- 1067
Query 1037 AA-AACGA-ATTAGCAACACTTAATGGCGTGATGAAAACTGAATACCGCATCGCACTAAG 1094
|| |||| || ||||||||||| || ||||||| |||||| |||||||| || |||||
Sbjct 1068 AACAACGCCATG-GCAACACTTAACGGTGTGATGATAACTGAGTACCGCATTGCTCTAAG 1126
Query 1095 ATCAGCCTTGCGTGGTGATTTTGCTGAAGGCGTTAGAGCAGTTTTGATTGACAAGGATCA 1154
||| || ||||| ||||||| ||||||| ||||||||||| |||| ||||||||| ||
Sbjct 1127 ATCTGCATTGCGCAGTGATTTCACTGAAGGTGTTAGAGCAGTCTTGACTGACAAGGACCA 1186
Query 1155 GAACCCAAAATGGAACCCGGCAAGCATT-GAAGAGGTAGACGGAAAC-GAAGTAGAAGCT 1212
||| || |||||||| || || ||| || || || ||||| | |||| ||||| || ||
Sbjct 1187 GAATCCGAAATGGAAACCAGCGAGC-TTAGACGAAGTAGATG-AAACCGAAGTGGACGCG 1244
Query 1213 CTGTTTAAACCATTAAGTCAGGAAGTGGAAGAGTTAAAAGTCTGA 1257
|| |||| |||||||||| ||| | |||||| |||| || |||
Sbjct 1245 CTCTTTATGCCATTAAGTCCTGAATTTGAAGAGCTAAACGTATGA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5