BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332990
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13330.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1923 0.0
> AT4G13330.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:7754248-7755955
REVERSE LENGTH=1405
Length=1405
Score = 1923 bits (1041), Expect = 0.0
Identities = 1210/1292 (94%), Gaps = 10/1292 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTAATTCAACGTTTCTCGTTGACAACAC-GCCATGGAAAAAAG-CTAAGCGTCG 58
||||| | |||||||||||||||||||||||||| | | ||| |||||| ||||||||||
Sbjct 119 ATGAACTCAATTCAACGTTTCTCGTTGACAACACAG-CGTGG-AAAAAGACTAAGCGTCG 176
Query 59 TCGAGTCATGTGTACGCCATTTCTGCGGAAGAGACGGCGTAATAAAGGAAGAAGGAGACT 118
|| ||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 177 TCAAGTCATGTGTACGACATTTCTGCGGAAGAGACGTCGTAATAAAAGACGAAGGAGACT 236
Query 119 GGTTTTACTCGCCGGAATGGTGGGATCCTCACGACGGTGGTTACACAGTCTCACGAGCTA 178
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 GGTTTTACTCGCCGGAATGGTGGGATCCTCAAGACGGTGGTTACACAGTCTCACGAGCT- 295
Query 179 CT-TCCGCTAAAGGAAACGGCGTCGTTTCAGTTGTCGCTCACCCTTCTTCTCTCCCTAGT 237
| ||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 296 GTCTCCAATAAAGGAAACGGCGTCGTTTCTGTCGTCGCCCACCCTTCTTCTCTCCCTAGT 355
Query 238 AGAGATTCATGGGGAGAAACTGAGAGATGGTTAGAGAAAAGGTATATGGAGATAATGT-C 296
||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |
Sbjct 356 AGAGATTCATGGGGAGAAACTGAGAAATGGTTAGAGAAAAGGTATATGGAGATTAT-TCC 414
Query 297 TAGAGATGGAGAGGAGAAGAATGGGAGGTTTAATGTACTTGGATATCAATGGCGATCGCT 356
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 AAGAGATACAGAGGAGAAGAATGGGAGGTTTAATGTACTTGGATATCAATGGCGATCGCT 474
Query 357 TCGGTTTAACGATGATACTCGACAAAGTACTGTGAAAGTTATGGCTGCTTGTAGAGCATT 416
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||
Sbjct 475 TCGGTTTAACGATGATACTAGACAAAGCACTGTGAAAGTTATGGCTGCTTGTAGAACATT 534
Query 417 GCAACCGAGTTCTGTTTTTTATATGCAACAGCCTCATTGTCTTGCTGTTCCATATCTGAA 476
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 GCAACCAAGTTCTGTTTTTTATATGCAACAGCCTCATTGTCTTGCTGTTCCATATCTGAA 594
Query 477 GAGCATGGTTTCAGTTGGATTGACTTCCCTTGTAGCTTCCAAATTTGATATGAGGAGTGT 536
||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 595 GAGTATGGTTTCAGTTGGATTGACTTCTCTTGCAGCTTCTAAATTTGATATGAGGAGTGT 654
Query 537 TGCTATTGGGGAGAAAGAAATGCGTATATTATGCATCGGTCACGGTGGAGGAAGTTTACC 596
||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||
Sbjct 655 AGCTATTGGGGACAAACAAATGCGTGTGTTATGTATCGGTCACGGTGGAGGAAGTTTACC 714
Query 597 GTTGTTTTTAGCTAAACACATTCTTGGTGCTGTTGTTGACATAGTTGAGCTCGACCCACT 656
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 715 GTTGTTTATAGCTAAACACATTCTTGGTGCTGTTGTTGACATAGTTGAGCTAGACCCACT 774
Query 657 TGTTATCTCAGAGTCGGTTCGAGCAATGGGCTTCCCTGCATCCTCTGTCATGACTGCAAC 716
||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |||||
Sbjct 775 TGTTATCTCAGAGTCGGTTCGAGCAATGGGCTTTCCTGCATTCTCTGTGATGACAGCAAC 834
Query 717 CGGGAAACGTGCGTTACCAACTCCTGAAATTATTGACCAAGTGATGTGGCGAGGCATCCA 776
|||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 835 TGGGAAACGTGTGTTACCAACTCCTGAAATTATTGACCAAGTGATGTGGGGAGGGATCCA 894
Query 777 TGAGAGACTCTTCC-TCTACGAATCAAAAGCAGAGGAATTCATTCTCAGGAACCAAAGTA 835
|||||||||| ||| | |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 895 TGAGAGACTC-TCCTTATACGAATCAAAAGCTGAGGATTTCATTCTCAGGAACCAAAGTA 953
Query 836 ATACTTATGACTTGATCTTCATGGATGCTTATGATGGAGCAGACATCTTTCCTCATAGTC 895
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 954 ATACTTATGACTTGATCTTCATGGATGCTTATGATGGAGCAGACATCTTTCCCCATAGTC 1013
Query 896 TGTGGGATTCCAATTCTGTGTTCATGAAAGCTCTGAGCAAAATACTTCACCATGAGCATG 955
|||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1014 TGTGGGATTCCAGTTCTGTGTTTATGAAAGCTCTGAGCAAAACACTTCACCATGAGCATG 1073
Query 956 GAACTATGGTGGTGAACCTTCACTCTGATGCAGACATTTCTGACATAGACAGAACAAATG 1015
||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct 1074 GAACTCTGGTGGTGAACCTTCACTCTGATGCAGACATCTCTGATATAGACAGATCAAATG 1133
Query 1016 AAGGTGTAACAACCGGGAAGTATGTACGGAAAGTCGGTCGAGCCTATAAAAAGGGTGTAA 1075
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 1134 AAGGTGTAACAACGGGGAAGTATGTACGGAAAGTTGGTAAAGCCTATAAAAAGGGTTTAT 1193
Query 1076 TGGAGAATGAGAGAAATGGGCTGGTGTTTGCTTGTGAAGTGCCATGGCTATGTAATGTAT 1135
| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TAGAGAATGAGAGGAATGGTCTGGTGTTTGCTTGTGAAGTGCCATGGCTATGTAATGTAT 1253
Query 1136 CACTAGTGGTGAGCAGGGGGATGGGGTCAGAGGGAAGACATAGAGAGAAAACCATGAGTA 1195
| || ||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1254 CGCTGGTGGTGAGCAGAGGGATGGGGTCAGAGGGAAGAGATAGAGAGAAAACCAAGAGTA 1313
Query 1196 ATCTCATGAAGACTTCACTAGAAGTTGACCGAATCCTGCGTCTGCCTTTCTCTTGCTTGG 1255
|||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1314 ATCTAATGAAGACTTCACTAGAAGTGGACCGAGTCCTGCGTCTGCCTTTCTCTTGCTTGG 1373
Query 1256 ATTATCTGAAAACTGGTCTTGCCATCATATAA 1287
||||||||||||||||||||||||||||||||
Sbjct 1374 ATTATCTGAAAACTGGTCTTGCCATCATATAA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5