BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg332994
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13260.1 | Symbols: YUC2 | Flavin-binding monooxygenase fami... 1973 0.0
> AT4G13260.1 | Symbols: YUC2 | Flavin-binding monooxygenase family
protein | chr4:7721618-7723989 REVERSE LENGTH=1843
Length=1843
Score = 1973 bits (1068), Expect = 0.0
Identities = 1188/1248 (95%), Gaps = 0/1248 (0%)
Strand=Plus/Plus
Query 1 ATGGAGTTTGTAACAGAAACGTTAGGCAAGAGAGTCCATGATCCGTACGTGGAGGATACT 60
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 374 ATGGAGTTTGTTACAGAAACGTTAGGCAAGAGAATCCATGATCCGTACGTGGAGGAAACT 433
Query 61 AGGTTCTTAATGATTCCCGGACCAATCATTGTCGGTTCCGGACCGTCGGGACTGGCCACA 120
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 434 AGGTGCTTAATGATTCCCGGACCAATCATTGTCGGTTCCGGGCCGTCGGGACTGGCCACA 493
Query 121 GCGGCGTGTTTGAAGTCGAGAAACATCCCTAGTTTGATTCTAGAACGTTCCACTTGCATA 180
||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 494 GCGGCATGTTTAAAGTCGAGAGACATCCCTAGTTTGATTCTAGAACGTTCCACTTGCATA 553
Query 181 GCTTCACTATGGCAGCTCAAAACATATGATCGTCTCCGACTTCATCTACCTAAACATTTC 240
|| ||||||||||||| |||||||||||||||||| ||||||||||| |||||| |||||
Sbjct 554 GCGTCACTATGGCAGCACAAAACATATGATCGTCTTCGACTTCATCTCCCTAAAGATTTC 613
Query 241 TGTGAGCTTCCCTTGATGCCTTTTCCTTCAAGCTACCCTACTTACCCTACAAAGCAACAG 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 TGTGAGCTTCCATTGATGCCTTTTCCTTCAAGCTACCCTACTTACCCTACAAAGCAACAG 673
Query 301 TTTGTCCAATACCTTGAGTCCTACGCGGAACATTTTGACCTAAAGCCCGTTTTTAACCAG 360
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 674 TTCGTCCAATACCTTGAGTCTTACGCCGAACATTTTGACCTAAAGCCCGTTTTTAACCAG 733
Query 361 ACCGTGGAGGAGGCAAAGTTTGATAGGCAGCGTGGGTTATGGAGGGTGAGGACTACCGGA 420
||||||||||| || ||||| ||||||| | |||||||||||||||||||||| ||||||
Sbjct 734 ACCGTGGAGGAAGCCAAGTTCGATAGGCGGTGTGGGTTATGGAGGGTGAGGACAACCGGA 793
Query 421 GGAAAGAATGATGAGACAATGGAGTATGTATCACGGTGGCTTGTTGTGGCCACCGGGGAG 480
|| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 794 GGGAAGAAGGATGAGACAATGGAGTATGTATCACGGTGGCTTGTTGTGGCGACCGGGGAG 853
Query 481 AATGCCGAGGAGGTGATGCCGGAGATTGATGGAATCGCGGATTTTGGTGGACCAATCCTC 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 854 AATGCCGAGGAGGTGATGCCGGAGATTGATGGAATCCCGGATTTTGGTGGACCTATCCTC 913
Query 541 CACACAAGCTCATATAAGAGTGGTGAAATGTTTAGTGAGAAGAAGGTTTTGGTCGTGGGA 600
||||||||||| |||||||| |||||||| ||||||||||||||| ||||||| || |||
Sbjct 914 CACACAAGCTCCTATAAGAGCGGTGAAATATTTAGTGAGAAGAAGATTTTGGTTGTAGGA 973
Query 601 TGTGGAAACTCCGGGATGGAAGTTTGTTTAGATCTTTGCAACTTCAATGCTCATCCTTCT 660
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 974 TGTGGAAACTCCGGGATGGAAGTTTGTTTAGACCTTTGCAACTTCAATGCTCTTCCTTCT 1033
Query 661 CTTGTGGTTCGTGACTCGGTGCACGTATTACCTCAAGAAATGCTAGGTATATCGACTTTC 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CTTGTGGTTCGTGACTCGGTACACGTATTACCTCAAGAAATGCTAGGTATATCGACTTTC 1093
Query 721 GGGATATCCACGAGCCTGCTAAAATGGTTTCCAGTGCAAGTGGTCGACCAGTTCTTGTTA 780
|||||||||||||||||||| || |||||||||||||| ||||| |||| ||||||||||
Sbjct 1094 GGGATATCCACGAGCCTGCTCAAGTGGTTTCCAGTGCACGTGGTGGACCGGTTCTTGTTA 1153
Query 781 CGTATGTCTCGGTTGGTTCTTGGTGACACGGATCGGTTAGGATTAGTTCGACCAAAACTT 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1154 CGTATGTCTCGGTTGGTTCTTGGTGACACGGATCGGTTAGGGTTAGTTCGACCAAAACTT 1213
Query 841 GGCCCTCTTGAACGCAAGATCAAGTGCGGAAAGACTCCTGTTTTGGACGTTGGTACTCTG 900
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1214 GGCCCTCTTGAACGCAAGATCAAATGCGGAAAGACTCCTGTTTTGGACGTTGGCACTCTT 1273
Query 901 GCCAAAATCCGAAGTGGACACATCAAGGTGTATCCGGAGTTAAAACGAGTAATGCATTAT 960
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1274 GCCAAAATCCGAAGTGGACACATCAAGGTGTATCCGGAGTTGAAACGGGTAATGCATTAT 1333
Query 961 TCGGCAGAGTTTGTTGATGGGAGAGTAGATAACTTCGACGCGATTATACTCGCTACGGGC 1020
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1334 TCGGCAGAGTTTGTTGATGGGAGAGTAGATAACTTCGACGCCATTATACTCGCCACGGGT 1393
Query 1021 TACAAAAGCAACGTACCCATGTGGCTAAAGGGAATGAACATGTTTTGTGAGAAAGATGGA 1080
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1394 TACAAAAGCAACGTACCCATGTGGCTAAAGGGAGTGAACATGTTTTCTGAGAAAGATGGA 1453
Query 1081 TTTCCGTATAAACCCTTTCCTAATGGTTGGAAAGGCGAAAGCGGATTGTATGCAGTCGGT 1140
|||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1454 TTTCCGCATAAACCATTTCCTAACGGTTGGAAAGGCGAAAGCGGATTGTATGCAGTCGGT 1513
Query 1141 TTCACAAAGCTTGGATTACTTGGTGCAGCCATTGATGCCAAGAAGATCGCCGAGGATATT 1200
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1514 TTCACAAAGCTTGGATTGCTTGGTGCAGCCATTGATGCCAAGAAGATCGCTGAGGATATT 1573
Query 1201 GAAGTTCAACGAAATTTCTTACCATTGGCTCGTCCTCAACATTGTTAA 1248
|| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1574 GAGGTTCAACGACATTTCTTACCATTGGCTCGTCCTCAACATTGTTAA 1621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5