BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg332998

Length=576
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24535.1 | Symbols:  | unknown protein; Has 28 Blast hits to...   804    0.0  


> AT3G24535.1 | Symbols:  | unknown protein; Has 28 Blast hits 
to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:8952006-8952572 FORWARD LENGTH=567
Length=567

 Score =  804 bits (435),  Expect = 0.0
 Identities = 522/563 (93%), Gaps = 9/563 (2%)
 Strand=Plus/Plus

Query  1    ATGGTTCTTAGAAGCTCAATCTCCAACACAAGAAAGCTCTTCCAAAAAACTATCGACAAC  60
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1    ATGGTTCTTAGAAGCTCAATCTCCAACACAAGAAAACTCTTCCAAAAAACTATCGACAAC  60

Query  61   TTCAAGTCATTCTTCTTCAACAACGGCACGTATCATAAACTACCAAAAACACCTAACAAC  120
            |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct  61   TTCAAGTCATTCTTCTTCAACAACGGTACTTATCACAAACTACCAAAAACACCTAACAAC  120

Query  121  ACCTCTACCAATAATACTAATGATCATCCAAAGTCCAAcatcatcacatcattatcatca  180
            ||||||||||||| || ||||||||||||||| ||| | | |||  ||||   | |||||
Sbjct  121  ACCTCTACCAATATTAATAATGATCATCCAAACTCC-A-A-CAT--CATC---A-CATCA  171

Query  181  tcatcatcatcCATACACAAGCAGTTTCAACCTAAACCCAAAGACTATGTGACTACAAAC  240
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  172  TCATCATCATCCATACACAAGCAATTTCAACCTAAACCCAAAGACTATGTGACTACAAAC  231

Query  241  AAAGCTTTAACTCTACAACCGAGAAGCGAAGACAGAGACGAGACACTATTTTCTCAACCA  300
            |||||||  | ||||||||||||||  | |||||||||||||||||| ||||| ||||||
Sbjct  232  AAAGCTTCGAGTCTACAACCGAGAATAGGAGACAGAGACGAGACACTCTTTTCCCAACCA  291

Query  301  AAGGTAAATCTTGTTCGTAGAAAGCTAAAGGAGATGGAGAAAATGATGAATGATGATATA  360
            ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct  292  AAGGTTAATCTAGTTCGTACAAAACTAAAGGAGATGGAGAAAATGATGAATGATGATATA  351

Query  361  GTAAGCGATGATTATTATGTCTCAGATGTAAGAGAGTTTTTGCATTGCTACTCTCGTCTT  420
             |||| ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct  352  ATAAGTGATGAATATTATGTCTCAGATGTAATAGAATTTTTGCATTGCTACTCTCGTCTT  411

Query  421  CGTTACACTGCTTACCTCGACGTGGTTGAGCATTTTTTCATGGAGGTCTACTCTGATTTC  480
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  412  CGTTACACTGCTTACCTCGACGTGGTTGAGAATTTTTTCATGGAGGTCTACTCTGATTTC  471

Query  481  TTTAGCCCTCATCATCTCGAGGGCACCCGAACGGCTGTAAAAAGAAGGCACCCCGCGGTG  540
            ||||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||| 
Sbjct  472  TTTAGCCCTCATCATCTCGTGGGCACCCGAACGGCTGTACAAAGAAGGTATCCCGCGGTT  531

Query  541  GTTGGAGTTGGATCGTACGGTGG  563
            |||||| ||||||||||||||||
Sbjct  532  GTTGGAATTGGATCGTACGGTGG  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27679014997


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5