BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333002
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13230.1 | Symbols: | Late embryogenesis abundant protein (... 353 6e-97
AT4G13235.1 | Symbols: EDA21 | embryo sac development arrest 21... 261 4e-69
> AT4G13230.1 | Symbols: | Late embryogenesis abundant protein
(LEA) family protein | chr4:7675653-7676680 REVERSE LENGTH=602
Length=602
Score = 353 bits (191), Expect = 6e-97
Identities = 201/206 (98%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 224 ACGAAGGGGCACAGACGATCTCGGATGCGGCGGGTAACTTGAAGGATAAGGCAAAGAACA 283
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 209 ACGAAGGGGCACAGACGATCTCCGATGCGGCGGGTAACTTGAAGGATAAGGCAAAGAACA 268
Query 284 CTGCAGAGGAGGCATGGGATAAGGTGAAGGACACTACGGAGAAGATCAAAGACACGGTCA 343
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 269 CTGCAGAGGAGGCCTGGGATAAGGTGAAGGACACTACGGAGAAGATCAAAGATACGGTCA 328
Query 344 CCGGAAAAACTGAGGAAACCAAGGAGTCTATTAAAGCCACAGCCAAGACCGTCGAGAGAA 403
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 329 CCGGAAAAACTGAGGAAACTAAGGAGTCTATTAAAGCCACAGCCAAGACCGTTGAGAGAA 388
Query 404 GCATGAACACCAAGAACCTCAAATAA 429
||||||||||||||||||||||||||
Sbjct 389 GCATGAACACCAAGAACCTCAAATAA 414
> AT4G13235.1 | Symbols: EDA21 | embryo sac development arrest
21 | chr4:7677866-7678247 REVERSE LENGTH=276
Length=276
Score = 261 bits (141), Expect = 4e-69
Identities = 153/159 (96%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACTACTCCAGGCCGGACTATGACCACAACCGCGGGAAGACCGGATGGGAAGACT 60
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 64 ATGGCTACTACTCCAGGCCGGACTATGAGCACAACCGCGGGAAGACGGGATGGGAAGAGT 123
Query 61 GGTCGGACGGAATGGCTGTACGTAGCCGGAGAATGTGCGAAATTACCACGTTGCAACAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 GGTCGGACGGAATGGCTGTACGTAGCCGGAGAATGTGCGAAATTACCACGTTGCAACAAA 183
Query 121 TATTGCGTCACCAATGGGTTTCATCTCGGTGGGTTTTGT 159
||||||||| | |||||||||||||| ||||||||||||
Sbjct 184 TATTGCGTCTCTAATGGGTTTCATCTTGGTGGGTTTTGT 222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5