BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333009

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13195.1 | Symbols: CLE44 | CLAVATA3/ESR-RELATED 44 | chr4:7...   462    8e-130


> AT4G13195.1 | Symbols: CLE44 | CLAVATA3/ESR-RELATED 44 | chr4:7662371-7663177 
REVERSE LENGTH=807
Length=807

 Score =  462 bits (250),  Expect = 8e-130
 Identities = 311/340 (91%), Gaps = 5/340 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAACTACAATTGATCAAACCAGCATCAAGTCACTGCATCTCAATCAACTCATCTGT  60
            |||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||
Sbjct  176  ATGGCAACTACAATTGATCAAACCAGCATCAAGTCATTGCATTTCCATCAAGTCATCCGT  235

Query  61   TTCATCATCACAATCATCTTCTTAGCTTTCTT-TGTTCTCATTAGCCCTACAAGTTCAAT  119
            || ||||||||||||||||||||||||||||| | |||||||| ||||||||||||| ||
Sbjct  236  TTGATCATCACAATCATCTTCTTAGCTTTCTTAT-TTCTCATTGGCCCTACAAGTTCCAT  294

Query  120  GAGTCATCACCTCCATGAATCCTCATCTAAGAATACTAAAACTCCTTCCAAGAGGTTCCT  179
            || ||||||||| |||||||||||||||||||| ||||   |||||||||||||||||||
Sbjct  295  GAATCATCACCTTCATGAATCCTCATCTAAGAACACTATGGCTCCTTCCAAGAGGTTCCT  354

Query  180  TCTACAACCTTCGACTCCATCTTCATCCACTATGAATTTGCGTCCAACAACTCACACTAG  239
            |||||||||||| |||||||||||||| ||||||||  ||||||||||| ||||| ||||
Sbjct  355  TCTACAACCTTCCACTCCATCTTCATCTACTATGAAAATGCGTCCAACAGCTCACCCTAG  414

Query  240  ACGGAGTCGCAGTTCTTCTTCTT---CGAGGAAGAGGAGGAGAGAGTTCGGAGCTGAAGC  296
            ||| ||| ||| |||||||||||   ||||||||||||||||||||||| ||||||||||
Sbjct  415  ACGCAGTGGCACTTCTTCTTCTTCGGCGAGGAAGAGGAGGAGAGAGTTCAGAGCTGAAGC  474

Query  297  TCATGAGGTTCCAAGTGGTCCAAACCCTATCTCCAACTAG  336
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  475  TCATGAGGTTCCAAGTGGTCCAAACCCTATCTCCAACTAG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5