BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333010
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13190.1 | Symbols: | Protein kinase superfamily protein | ... 987 0.0
> AT4G13190.1 | Symbols: | Protein kinase superfamily protein
| chr4:7659435-7661106 REVERSE LENGTH=1170
Length=1170
Score = 987 bits (534), Expect = 0.0
Identities = 657/714 (92%), Gaps = 18/714 (3%)
Strand=Plus/Plus
Query 508 CTAGATGTTGGAGCGGGACAACAACCACTGGATTGGAACTCTCGGATAAGGATTGCCTTA 567
|||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 472 CTAGATGTTGTAGTAGGACAACAACCATTGGATTGGAACTCTCGGATAAGGATTGCCTTA 531
Query 568 GGAGCCGCAAAAGGGCTTGAGTATCTCCACGAGAAGGCAAACCCTCCAGTGATATATCGA 627
||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||
Sbjct 532 GGAGCCGCAAAAGGGCTCGAATATCTCCACGAAAAGGCAAACCCTCCGGTGATATATCGA 591
Query 628 GATTTCAAATCGTCAAATATATTGCTTAACGGAGATTTGGATGCAAAACTATCAGATTTC 687
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 592 GATTTCAAATCGTCAAATATATTGCTTAATGTAGATTTTGATGCAAAACTATCAGATTTT 651
Query 688 GGTTTGGCAAAACTTGGTTCGGTTGGGGACACACAAAATGTATCTTCCCGAGTAGTGGAA 747
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 GGTTTGGCAAAACTTGGTTCGGTTGGGGACACACAAAATGTATCTTCCCGAGTAGTGGGA 711
Query 748 ACTTACGGTTATTGCGCTCCTGAGTATCATAAAACCGGTCAGTTGACGGTTAAATCTGAT 807
||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 712 ACTTATGGTTATTGCGCTCCTGAGTATCACAAAACCGGTCAGCTGACGGTTAAATCTGAT 771
Query 808 GTATATAGTTTTGGAGTTGTGCTGTTAGAACTCATAACCGGTAAGCGAGTTATCGATACA 867
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| |||
Sbjct 772 GTATATAGTTTTGGGGTTGTGTTGTTGGAACTCATAACCGGTAAGCGAGTTATCGACACA 831
Query 868 ACGAGACCAAGTCATGAACAAAATTTGGTTACTTGGGCACAACCGATTTTCAGAGAACCA 927
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 832 ACGAGACCATGTCATGAACAAAATCTGGTTACTTGGGCACAACCGATTTTCAGAGAACCA 891
Query 928 AATAGATTCCCAGAGCTAGCGGACCCACTTCTTCGAGGCGAGTTCCCGGAAAAAAGTTTG 987
||||||||||| ||||||||||| |||||||||| ||| |||||||||||||||||||||
Sbjct 892 AATAGATTCCCCGAGCTAGCGGATCCACTTCTTCAAGGGGAGTTCCCGGAAAAAAGTTTG 951
Query 988 AACCAAGCTGTAGCAGTAGCGGCAATGTGTCTGCAAGAAGAACCAATAGTGCGACCATTA 1047
||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 952 AACCAAGCTGTAGCAATAGCGGCAATGTGTCTACAAGAAGAACCAATAGTTCGACCTTTA 1011
Query 1048 ATCAGTGATGTCGTCACCACCTTAAGTTTTATGAGTACA-AACACCGGTTCACCTTCCGG 1106
||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 1012 ATCAGTGATGTTGTCACCGCCTTAAGTTTTATGAGTACAGAA-ACCGGTTCACCTTCCGG 1070
Query 1107 TATAACCGATAACGCCCTGAACCTTTTTCAACC-TTTATCTTCTAAGACAGTGGAGGACC 1165
| |||| | ||| | || | || |||| ||||||| ||||||| ||||||||||
Sbjct 1071 TCTAACGGG-AAC-CGCT---C-TT----AACCCTTTATCTCCTAAGACCGTGGAGGACC 1120
Query 1166 AGGACGTG-CTTCAATGTGAGTCAGTTCCAAGAGATGTGTACTCGTTACTATAA 1218
||| | || |||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1121 AGGGC-TGGCTTCAATGTGAGTC--T-CCAAGAGATGTGTACTCGTTACTATAA 1170
Score = 743 bits (402), Expect = 0.0
Identities = 457/484 (94%), Gaps = 1/484 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTGTTTCTTGGGTCCAACTACGAACAACAAAAGTAGAGAAAATGAAGGCTCATCT 60
||||||||||||||||||||| | || |||||||||||||| || |||||||||||||||
Sbjct 1 ATGAGTTGTTTCTTGGGTCCATCGACAAACAACAAAAGTAGGGAGAATGAAGGCTCATCT 60
Query 61 TTGGCTGCTCCTTATCAACAACAAAACCTAGCTTGGAATGATCGGAAGCAGATAACAACA 120
|||||||||||||| |||||||||||||| | |||||||||| | |||||||||||||
Sbjct 61 ATGGCTGCTCCTTATGAACAACAAAACCTACCACGGAATGATCGTAGGCAGATAACAACA 120
Query 121 TGGGAAGCGGTGGGAATGAACAAAGAATCACCGAAAAATATCGAGGCAAAGAGTTTCAAA 180
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 121 TGGGAAGCGGTGGGAACGAACAAAGAATCACCGAAAAATATCAAGGCAAAGAGTTTCAAA 180
Query 181 TTTCGTGAATTAGCTACCGCGACAAACAGTTTCAGGCAAGAGTTCTTGATTGGAGAAGGA 240
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 TTTCGTGAATTAGCAACCGCTACAAATAGTTTCAGGCAAGAGTTCTTGATCGGAGAAGGA 240
Query 241 GGGTTTGGGAGGGTTTACAAGGGAAAGATGGAGAAGACAGGACAGGTGGTGGCTGTGAAG 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 GGGTTTGGGAGGGTTTACAAAGGAAAGATGGAGAAGACAGGACAGGTGGTAGCTGTGAAG 300
Query 301 CAACTTGACCGTAATGGATTACAAGGGAATAGAGAGTTTCTGGTAGAGATCTTCAGGTTG 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAACTTGACCGTAATGGATTACAAGGGAATAGAGAGTTTCTGGTAGAGATCTTCAGGTTA 360
Query 361 AGTCTTCTTCATCATCCCAATCTTGCCAATCTCATTGGATATTGCCTTGATGGAGACCAG 420
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGTCTTCTTCATCATCCCAACCTTGCCAATCTCATTGGATATTGCCTTGATGGAGACCAG 420
Query 421 AGACTTCTTGTTTACGAGTTCATGCCTCTTGGTTCCCTAGAAGACCATCTCCTAGAATTT 480
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||| | |
Sbjct 421 AGACTTCTTGTTCACGAGTTCATGCCTCTTGGTTCCCTTGAAGATCATCTCCTAGA-TGT 479
Query 481 TGTA 484
||||
Sbjct 480 TGTA 483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5