BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333017
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superf... 89.8 5e-17
AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superf... 84.2 2e-15
AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superf... 73.1 5e-12
> AT4G39550.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18380526-18381905 REVERSE LENGTH=1380
Length=1380
Score = 89.8 bits (48), Expect = 5e-17
Identities = 116/147 (79%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 872 TGGCGGATTATGGTGGAAAGATGGCGGTTTTATGGCACAAGCAT-GATCGTTCTAGCAAT 930
||||||||||||||||||||||||||||||| ||| ||||| || | | | || | ||
Sbjct 1017 TGGCGGATTATGGTGGAAAGATGGCGGTTTTCTGGGACAAG-ATTG-T-GA-CTTCCGAT 1072
Query 931 GATA-AGGGAAGG----GTT-ATATGGTGTGCAGAGATTGCGCTTGAAAGGCGTAGTAGT 984
||| | | ||| | | || | |||||| | |||||||||||||||||| | ||
Sbjct 1073 GATGGATGTAAGAACAAGATGATTTTGTGTGCTGTGATTGCGCTTGAAAGGCGCAACAGC 1132
Query 985 GAAGAAATTTGGGGGAAGGTCGAGTGG 1011
||||| |||||||||||||||||||||
Sbjct 1133 GAAGAGATTTGGGGGAAGGTCGAGTGG 1159
> AT2G03460.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:1043621-1044992 REVERSE LENGTH=1280
Length=1280
Score = 84.2 bits (45), Expect = 2e-15
Identities = 68/79 (86%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 950 GGTGTGCAGAGATTGCGCTTGAAAGGCGTAGTAGT-GAAGAAATTTGGGGGAAGGTCGAG 1008
|||||||||||||||||||||||||||| | ||| | ||||||||||||| || |||
Sbjct 1042 GGTGTGCAGAGATTGCGCTTGAAAGGCGCAAAAGTTGT-GAAATTTGGGGGATTGTTGAG 1100
Query 1009 TGGTTTGATCATGTGCTTA 1027
||||||| | |||||||||
Sbjct 1101 TGGTTTGGTGATGTGCTTA 1119
> AT5G51250.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:20830743-20831849 FORWARD LENGTH=1107
Length=1107
Score = 73.1 bits (39), Expect = 5e-12
Identities = 185/250 (74%), Gaps = 32/250 (13%)
Strand=Plus/Plus
Query 805 GAATGT--AGAATCTTGAAGGGTATGGAAGGACAACTGCCTAAGTTTA-CT-A-AATATT 859
|||||| ||||| ||||| ||| || ||| ||| ||| |||||| || | |||| |
Sbjct 827 GAATGTGGAGAATATTGAAAGGTTTGTTAGG---ACTACCT-AGTTTACCTGAGAATA-T 881
Query 860 GTAATGTTCA-ATTGGCGGATTATGGTGGAAAGATGGCGGTTTTATGGCACA-AGCAT-G 916
|| |||| | |||||| |||||||||||||||||||||||||||||| | | || || |
Sbjct 882 GT-TTGTT-AGATTGGCTGATTATGGTGGAAAGATGGCGGTTTTATGGGA-AGAGGATCG 938
Query 917 ATCGTTCTAGCAATGATAAG-GG-A-AG--G-GTT-AT-AT--GGTGTGCAGAGATTGCG 966
| |||| | | | | || | || | | | || || ||||||| | |||||||
Sbjct 939 CCC-TTCTTGTGGGGCTG-GTGGCAGAGATGAGATGATGATTTGGTGTGCCGTGATTGCG 996
Query 967 CTTGAAAGGCG--TAGTAGTGAAGAAATTTGGGGGAAGGTCGAGTGGTTTGATCATGTGC 1024
||| |||||| || | | || ||||||| ||||| |||||||||||||||||||
Sbjct 997 CTTAAAAGGCACCTAA-ATTTTAGTT-TTTGGGGAAAGGTTGAGTGGTTTGATCATGTGC 1054
Query 1025 TTAAAGTCCC 1034
||| ||||||
Sbjct 1055 TTACAGTCCC 1064
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5