BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333020
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention ... 747 0.0
> AT3G25040.1 | Symbols: ERD2B | endoplasmic reticulum retention
defective 2B | chr3:9124304-9126298 FORWARD LENGTH=1070
Length=1070
Score = 747 bits (404), Expect = 0.0
Identities = 568/648 (88%), Gaps = 8/648 (1%)
Strand=Plus/Plus
Query 1 ATGAATATTTTCAGATTAGCCGGTGATATGACTCACCTCGCTAGTGTTCTTGTCTTGCTT 60
||||| |||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 176 ATGAACATTTTCAGATTAGCTGGTGATATGACTCACCTAGCCAGTGTTCTTGTCTTGCTT 235
Query 61 CTCAAGATCCACACCATCAAATCCTGCGCCGGTGTATCGTTAAAGACTCAAGAACTCTAT 120
||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||
Sbjct 236 CTCAAGATCCACACCATCAAATCCTGCGCTGGTGTTTCATTGAAGACTCAAGAACTCTAT 295
Query 121 GCCATTGTCTTCGCTACGCGATATTTAGATATACTT-ACGAGTTTT-TATTCTATCTATA 178
||||||||||| || ||||| ||||| ||||| || ||||||||| | | || | || |
Sbjct 296 GCCATTGTCTTTGCGACGCGTTATTTGGATATT-TTCACGAGTTTTGTGT-CTCTGTACA 353
Query 179 ACAC-TCTAATGAAGTTGATATTCTTAGGAAGTTCTTTTTCAATAGTTTGGTACATGAAG 237
|||| |||| |||||||| | || ||||||||||||||||| || || ||||||||||||
Sbjct 354 ACACCTCTA-TGAAGTTGGTGTTTTTAGGAAGTTCTTTTTCGATTGTGTGGTACATGAAG 412
Query 238 TATCATAAGACTGTTCATAGGACTTATGATAGAGAACAAGATACGTTTCGTCATTGGTTT 297
||||||||| | || || |||||||| || ||||| |||||||||||||||||||||||
Sbjct 413 TATCATAAGGCCGTCCACAGGACTTACGACAGAGAGCAAGATACGTTTCGTCATTGGTTC 472
Query 298 CTTGTGCTTCCTTGCATTCTCTTAGCTCTTTTGATTCACGAAAAGTTTACCTTTCTCGAG 357
||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 473 CTTGTGCTTCCTTGCTTTCTCTTAGCTCTTTTGATACATGAAAAGTTTACCTTTCTTGAG 532
Query 358 GTCCTGTGGACTTTTTCATTGTATTTGGAAGCTGTTGCTATACTT-CCTCAGCTTGTTTT 416
|| ||||||| | ||||||||| ||||| |||||||| ||| || ||||||||||| ||
Sbjct 533 GTATTGTGGACGTCTTCATTGTACTTGGAGGCTGTTGCCATA-TTACCTCAGCTTGTCTT 591
Query 417 GCTGCAGAGGACTAGAAATATCGACAACTTGACTGGACAATACATATTTCTCCTCGGGGG 476
| |||| |||||||||||||| ||||||||||| |||||||| ||||||||||| |||||
Sbjct 592 GTTGCAAAGGACTAGAAATATTGACAACTTGACCGGACAATATATATTTCTCCTTGGGGG 651
Query 477 ATACCGAGGATTCTACATACTCAACTGGATTTATCGTTACTTCACTGAACCACACTTTGT 536
||||| ||||| ||||| ||||||||||| || |||||||||||||| || ||||||||
Sbjct 652 GTACCGTGGATTATACATCCTCAACTGGATCTACCGTTACTTCACTGAGCCGCACTTTGT 711
Query 537 TCACTGGATAACATGGATCGCTGGGCTCGTTCAAACATTGCTCTACGCCGATTTCTTCTA 596
||||||||||||||||||||| ||| | ||||||||| ||||||| ||||| ||||||||
Sbjct 712 TCACTGGATAACATGGATCGCCGGGTTTGTTCAAACACTGCTCTATGCCGACTTCTTCTA 771
Query 597 CTATTACTTCCAAAGTTGGAAAAACAATAAAAAGCTGCAGCTACCAGC 644
||||| |||| ||| ||||| ||||| |||||||| || |||||||
Sbjct 772 TTATTATTTCCTAAGCTGGAAGAACAACAAAAAGCTCCAATTACCAGC 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31295873581
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5