BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333028
Length=1020
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13060.1 | Symbols: | F-box associated ubiquitination effec... 1037 0.0
> AT4G13060.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:7619935-7620942 REVERSE LENGTH=1008
Length=1008
Score = 1037 bits (561), Expect = 0.0
Identities = 883/1031 (86%), Gaps = 51/1031 (5%)
Strand=Plus/Plus
Query 1 ATGGCCAAGGATGATCAGCAGAAGCAAGTCTTCTGCATCTTCTGCATATTGTCATTTCAT 60
|||||||||||||||||||| ||||||||| | || | ||| ||||||||||||
Sbjct 1 ATGGCCAAGGATGATCAGCATAAGCAAGTC-T-TG-------TACATGTTGTCATTTCAT 51
Query 61 GAGAACTCTACGAA-TTATTCTGATGTGAACCATTTTCATATCATGCACCCTACAAAAGA 119
||||||| || || |||||||||||||||| ||||||||| ||||| ||||||| ||||
Sbjct 52 GAGAACTTTA-AAAGTTATTCTGATGTGAACAATTTTCATAACATGCCCCCTACAGAAGA 110
Query 120 TTGTCAATACGACTACTATAATGCTTCTGTCAATGGCTTGGTCACTTTCA-AAACCGAA- 177
||| || ||| || |||||| ||||||||||||||| ||||||||||||| || | ||
Sbjct 111 TTGCCATTACTACAACTATAGTGCTTCTGTCAATGGTTTGGTCACTTTCAGGAA-C-AAT 168
Query 178 AC-GGGTATTGTAATCTGGAACCCTACCATAAAAGAACATATAACCTTGCCTCAACCTAA 236
|| | | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 169 ACAGAG-ATTGTAATCTGGAACCCCACCATGAAAGAACATATAACCTTGCTTCAACCTAA 227
Query 237 AATCTCTAAGCACGT-AAGATGTTTTTTAGGATATGACCCTAAGGAAAATACATATAAAA 295
||||||||||| | | || || | |||||||||||| |||||||| ||||||||||||
Sbjct 228 AATCTCTAAGCCCCTAAAAAT-CTATTTAGGATATGATCCTAAGGAGAATACATATAAAC 286
Query 296 TACTATCGATTG---ATTTTTGTAAGAC-ATGGGAAAAATATCAAAAACATAAGATTCTT 351
| |||||| | | |||| || | | |||||| | |||||||| | | | ||||||
Sbjct 287 TTCTATCGGTGGCAAATTTAAATACG-CTATGGGACGACTATCAAAAGCCTCATATTCTT 345
Query 352 ACATTAGGATCTCAAGAATCATGGAGGGTGATAACAAATAGCCCTGATCATTATCCTAGA 411
|||||||||||||||||||||||||||||||||| ||| |||||||||||| | |||| |
Sbjct 346 ACATTAGGATCTCAAGAATCATGGAGGGTGATAAAAAACAGCCCTGATCATAAACCTACA 405
Query 412 CGTGGGTATTATTGCATCAACGGAGTTGTTTACTATAGA-GCATATATAACCTAC-GAAG 469
|| ||||||||||||||||||||||||| ||||||| | ||||||||| | | | ||||
Sbjct 406 AGTAGGTATTATTGCATCAACGGAGTTGTGTACTATA-ATGCATATATATCAT-CTGAAG 463
Query 470 -A-AT--A--T---CATAA-AATTTACCCTCCGTTTATCAAAGAAATCGAGCT-GGATAT 518
| || | | ||||| | | | |||| |||||| ||||||| ||||||| || | |
Sbjct 464 AACATCGACGTGGCCATAACACTGT-CCCTGCGTTTACCAAAGAATTCGAGCTAGG-TGT 521
Query 519 GAGATTGAACG-AGATCATTATGAGTTTTGATGTGAGGTCTGAACAGTTCAAATCAATTG 577
|||| |||| | | || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 522 GAGAGTGAA-GCATATTATTATGAGTTTTGATGTGAGGTCTGAAAAGTTCAAATCAATTC 580
Query 578 AATTACCT-GCTCGTGCGAACCAATATGAATC-AAAGCT-TGATGAATCTCTGATGACTT 634
|| ||||| | | ||| | ||||||||||| | || | | | || ||||||| |||| ||
Sbjct 581 AAATACCTAG-TAGTGGGCACCAATATGAA-CTAATG-TGTTATAAATCTCTAATGAGTT 637
Query 635 ACCAAGGAAAATTAGCATGGGTTTGCTATAATTCAAATATGATCAAATTATGGGTTTTGC 694
|| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 638 ACAAAGGAAAATTAGCATGGGTTTGCTGTAATTCAAATATTATCAAATTATGGGTTTTGT 697
Query 695 AAGAT-CTTGAAAAACAAGAATGGTCAAAAAATGAATTTGTTTTACCTAATTTGCCTCAA 753
||| | || |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 698 TGGATGC-TGGAAAACAAGAATGGTCAGAAAATGAATTTGTTTTACCTAGTTTGCCTCAA 756
Query 754 AGAGATTTGCTTGGGAGTGCTAAGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 813
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 757 AGAGATTTGCTTGGGAGTGCTAGGTTAAGTGGTGCCACTAGTACTGGTGAGTTTATCTAT 816
Query 814 GTATCGGGAAAATATTTCAAAGACATTTCGGTTTTTTATTACGATCCGGTGAGAGAGACT 873
|||||||||||| |||||||||||||||||| ||||||||||||||| |||||| |||||
Sbjct 817 GTATCGGGAAAACATTTCAAAGACATTTCGGCTTTTTATTACGATCCCGTGAGAAAGACT 876
Query 874 ATCACAAGTGTCAATGGACTTGAATATGAGAAATTTAGGTCCTGTTATGGATCTAATAAC 933
|||||||||||||| |||||| | |||||| ||||||||| |||||||||| || ||||
Sbjct 877 ATCACAAGTGTCAAAGGACTTTATTATGAGGAATTTAGGTGTTGTTATGGATTTAGTAAC 936
Query 934 GATGAGATGGCTTGTCTCCGATCTTATCCGAATCATATTGAAAATCTCATGTCTCTAAGG 993
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 937 GATGAGATGGCTTGTCTTCGATCTTATCCGAATCATATTGAAAGTCTCATGTCTCTTAGG 996
Query 994 AACATCATGTG 1004
|||||||||||
Sbjct 997 AACATCATGTG 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49982976265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5