BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333029
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT4G13050.1 | Symbols: | Acyl-ACP thioesterase | chr4:7617561-... 1779 0.0
AT3G25110.1 | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesteras... 769 0.0
> AT4G13050.1 | Symbols: | Acyl-ACP thioesterase | chr4:7617561-7619616
FORWARD LENGTH=1543
Length=1543
Score = 1779 bits (963), Expect = 0.0
Identities = 1058/1105 (96%), Gaps = 2/1105 (0%)
Strand=Plus/Plus
Query 1 ATGTTGAAGCTTTCGTGTAATGTAACTGACCACGTACACAACTTTTTCTCCGATTCTCGC 60
|||||||||||||||||||||||||||||||| |||||||| |||||||| | ||||||
Sbjct 179 ATGTTGAAGCTTTCGTGTAATGTAACTGACCATATACACAACCTTTTCTCCAACTCTCGC 238
Query 61 CGGATTTTTGTTCCGGTGCATCGCCGTACCGGACCCATCTCTTGTTTTCAGTTAAAGAAG 120
||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct 239 CGGATTTTTGTTCCGGTGCATCGGCAAACCAGACCCATCTCTTGTTTTCAGTTAAAGAAG 298
Query 121 GAACCTTTACGGGCAATTCTCTCTGCTGATCATGGAAACAGCAGCCTCCGTGTTGCTGAT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 299 GAACCTTTACGGGCAATTCTCTCTGCTGATCATGGAAACAGCAGCGTCCGTGTTGCTGAT 358
Query 181 TCTGTTTCCGTTACTTCTCCGGCGGATCGTCTCCGATTTGGTCGATTGATGGCAGATGGG 240
||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 359 ACTGTTTCCGGTACTTCTCCGGCGGATCGTCTCCGGTTTGGTCGATTGATGGAAGATGGG 418
Query 241 TTTTCTTATAAGGAGAAGTTCATTGTTAGAAGCTATGAAGTTGGGATTAACAAAACTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTTCTTATAAGGAGAAGTTCATTGTTAGAAGCTATGAAGTTGGGATTAACAAAACTGCC 478
Query 301 ACTGTTGAAACAATTGCTAATCTTTTGCAGGAAGTGGCATGTAATCATGTTCAGAAAGTT 360
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 479 ACCATTGAAACAATTGCTAATCTCTTGCAGGAAGTGGCATGTAATCATGTTCAGAATGTT 538
Query 361 GGATTTTCGACTGATGGGTTTGCTACAACACTTACTATGAGGAAATTGCATCTCATTTGG 420
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 539 GGATTTTCTACTGATGGATTTGCTACAACACTTACCATGAGGAAATTGCATCTTATTTGG 598
Query 421 GTTACTGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTTACTGCAAGAATGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAG 658
Query 481 ATTGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATTTTGAAA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 ATTGAGACTTGGTGTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATTTT-AAA 717
Query 541 G-ATTGTGCGACCGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCA 599
| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGATTGTGCTACTGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCA 777
Query 600 AGACACAAGGCGGCTTCAAAGAGTTACAGATGAAGTTCGGGACGAGTATTTGGTTTTCTG 659
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 778 AGACACAAGGCGGCTTCAAAGGGTTACAGACGAAGTTCGGGACGAGTACTTGGTTTTCTG 837
Query 660 TCCTCGAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAACAGCTTAAAGAAGATCCC 719
||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 838 TCCTCCAGAGCCTAGACTAGCGTTTCCAGAGGAGAACAATAGCAGCTTAAAGAAAATCCC 897
Query 720 GAAACTGGAAGATCCTGCTCAGTATTCTATGCTAGGGCTTAAGCCTAGACGAGCTGATCT 779
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 GAAATTGGAAGATCCTGCTCAGTATTCTATGCTTGGGCTTAAGCCTAGACGAGCTGATCT 957
Query 780 AGACATGAACCAGCATGTGAATAATGTCACCTACATTGGATGGGTCCTTGAGAGCATACC 839
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 958 TGACATGAACCAACATGTGAATAATGTTACCTACATTGGATGGGTCCTTGAGAGCATACC 1017
Query 840 GCAAGAAGTCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATG 899
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCAAGAAATCATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATG 1077
Query 900 CCAGCAAGATGACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGCGGTGTC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1078 CCAGCAAGATGACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGTGGTCTC 1137
Query 960 AAAGCTTACTGGGACCAACGGATCTACCACGTCAAGCAAACAAGAACACAATGAGAGCCA 1019
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1138 AAAGCTTACTGGGACGAACGGATCTACCACGTCAAGCAAACGAGAACACAATGAGAGTCA 1197
Query 1020 ATTCTTGCATATCTTGAGGTTGTCAGAAAATGGACAGGAGATCAATCGTGGGAGAACCCA 1079
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 CTTCTTGCATATCCTGAGGTTGTCAGAAAATGGTCAGGAGATCAATCGTGGGAGAACCCA 1257
Query 1080 ATGGCGAAAGAAGTCCTCAAGATGA 1104
||||||||||||||| |||||||||
Sbjct 1258 ATGGCGAAAGAAGTCATCAAGATGA 1282
> AT3G25110.1 | Symbols: AtFaTA, FaTA | fatA acyl-ACP thioesterase
| chr3:9146271-9148486 REVERSE LENGTH=1620
Length=1620
Score = 769 bits (416), Expect = 0.0
Identities = 754/912 (83%), Gaps = 44/912 (5%)
Strand=Plus/Plus
Query 202 GCGGATC-GTCTCCGATTTGGTCGATTGA-TGGCAGATGGGTTT-TCTTATAAGGAGAAG 258
||||||| | |||||||| ||| | |||| | | |||| ||||| |||||||| ||||||
Sbjct 418 GCGGATCAG-CTCCGATTAGGTAGTTTGACT-GAAGAT-GGTTTATCTTATAAAGAGAAG 474
Query 259 TTCATTGTTAGAAGC-TATGAAGTTGGG-ATTAACAAAACTGCCACTGTTGAAACAATTG 316
|| ||||||| | | || |||| |||| | ||||||||| || ||||||||||| ||||
Sbjct 475 TTTGTTGTTAG-ATCTTACGAAG-TGGGTAGTAACAAAACCGCTACTGTTGAAACCATTG 532
Query 317 CTAATCTTTTGCAGGAAGTGGCATGTAATCATGTTCAGAAA--GTTGGATTTTCGACTGA 374
|||||||||| ||||| |||| ||||||||||| || ||| ||||| |||||||||||
Sbjct 533 CTAATCTTTTACAGGAGGTGGGATGTAATCATG--CACAAAGTGTTGGTTTTTCGACTGA 590
Query 375 TGGGTTTGCTACAAC-ACTTACTATGAGGAAATTGCATCTCATTTGGGTTACTGCAAGAA 433
||||||||| ||||| || |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 591 TGGGTTTGCAACAACAAC-TACTATGAGGAAGTTGCATCTCATTTGGGTTACTGCGAGAA 649
Query 434 TGCACATTGAGATTTACAAGTATCCAGCTTGGAGTGATGTGGTTGAGATTGAGACTTGGT 493
|||| || ||||| || ||||| || |||||| |||||||||||||||| ||||||||||
Sbjct 650 TGCATATCGAGATCTATAAGTACCCTGCTTGGGGTGATGTGGTTGAGATAGAGACTTGGT 709
Query 494 GTCAGAGTGAAGGAAGGATTGGAACTAGACGTGATTGGATT-TTGAAAGATTGTG-CGAC 551
|||||||||||||||||||||| || || |||||||||||| || || |||| || | ||
Sbjct 710 GTCAGAGTGAAGGAAGGATTGGGACAAGGCGTGATTGGATTCTT-AAGGATTCTGTC-AC 767
Query 552 CGGTGAAGTTATTGGACGTGCTACAAGCAAGTGGGTGATGATGAACCAAGACACAAGGCG 611
|||||||| | ||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 768 TGGTGAAGTCACTGGCCGTGCTACAAGCAAGTGGGTGATGATGAACCAAGACACGAGACG 827
Query 612 GCTTCA-AAGAGTTACAGATGAAGTTCGGGACGAGTATTTGGTTTTCTGTCCTCGAGAGC 670
|||||| || |||| | ||||| |||||||||||||| ||||| |||||||||| ||| |
Sbjct 828 GCTTCAGAA-AGTTTCTGATGATGTTCGGGACGAGTACTTGGTCTTCTGTCCTCAAGAAC 886
Query 671 CTAGACTAGCGTTTCCAGAGGAGAACAATA-ACAGCTTAAAGAAGATCCCGAAACTGGAA 729
| || |||| ||||| || ||||| || | | ||||| ||||| ||||||||||| |||
Sbjct 887 CGAGGTTAGCATTTCCGGAAGAGAATAACAGA-AGCTTGAAGAAAATCCCGAAACTCGAA 945
Query 730 GATCCTGCTCAGTATTCTATGCTAGGGCTTAAGCCTAGACGAGCTGATCTAGACATGAAC 789
||||| ||||||||||| ||| | |||||||||||||||||||||||||| |||||||||
Sbjct 946 GATCCGGCTCAGTATTCAATGATTGGGCTTAAGCCTAGACGAGCTGATCTCGACATGAAC 1005
Query 790 CAGCATGTGAATAATGTCACCTACATTGGATGGGTCCTTGAGAGCATACCGCAAGAAGTC 849
|||||||| |||||||||||||| ||||||||||| || ||||||||||| |||||| |
Sbjct 1006 CAGCATGTCAATAATGTCACCTATATTGGATGGGTTCTCGAGAGCATACCACAAGAAATT 1065
Query 850 ATAGACACGCACGAGCTTAAAGTTATAACTCTAGATTACAGAAGAGAATGCCAGCAAGAT 909
||||||||||||||||| | || |||||||| ||||| ||||||||||| || |||||
Sbjct 1066 GTAGACACGCACGAGCTTCAGGTCATAACTCTGGATTATAGAAGAGAATGTCAACAAGAC 1125
Query 910 GACATTGTAGATTCACTTACCACCTCTGAAACCCCCAATGAGGCGGTGTCAAAGCTTACT 969
|| | || |||||||| |||||| | || || | | || ||| || |
Sbjct 1126 GATGTGGTGGATTCACTCACCACC----A--CCACC--T----C--TG--AAA--TTGGT 1167
Query 970 GGGACCAACGGATCTACCACGTCAAGCAAACAAGAACACAATGAGAGCCAATTCTTGCAT 1029
|| ||||| || ||| ||||||| ||| ||| | ||||| || ||||| ||||||||
Sbjct 1168 GGAACCAATGGCTCTGCCACGTCTGGCACACAGGGCCACAACGATAGCCAGTTCTTGCAC 1227
Query 1030 ATCTTGAGGTTGTCAGAAAATGGACAGGAGATCAATCGTGGGAGAACCCAATGGCGAAAG 1089
|| |||||||||| | | |||| ||||||||||| || |||| ||| | ||| |||||
Sbjct 1228 CTCCTGAGGTTGTCTGGAGATGGTCAGGAGATCAACCGCGGGACAACTCTGTGGAGAAAG 1287
Query 1090 AAGTCCT-CAAG 1100
||| ||| ||||
Sbjct 1288 AAG-CCTTCAAG 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5