BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333040
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12910.1 | Symbols: scpl20 | serine carboxypeptidase-like 20... 2130 0.0
> AT4G12910.1 | Symbols: scpl20 | serine carboxypeptidase-like
20 | chr4:7550433-7553332 REVERSE LENGTH=1918
Length=1918
Score = 2130 bits (1153), Expect = 0.0
Identities = 1320/1401 (94%), Gaps = 10/1401 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTAGTCTCTTTACTGTTTGTAATA 60
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 297 ATGGTTTGGTTAATGAAAGTTTTTGTCTTTGTGACATTACTCTCTTTAGTGTTTGTAATA 356
Query 61 ACAGAATCAGCTCCTGAATCTGCTCTTATTACCAAACTTCCTGGCTTCGAAGGCACTTTT 120
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 357 ACAGAATCAGCTCCTGAATCTGCTCTTATCACCAAACTTCCTGGTTTCGAAGGCACTTTT 416
Query 121 CCTTCAAAACATTACTCCGGGTATGTGACTATTGATAAGGATCATGGAAAGAATCTGTGG 180
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 417 CCTTCGAAACATTACTCCGGGTATGTGACAATTGATAAGGAACATGGAAAGAATCTATGG 476
Query 181 TATTACTTTGTTGAATCGGAGAAGGATCCATCGAAAGATCCGGTCGTACTATGGCTCAAT 240
||||||||| |||||||||||||| ||||||||||||||||||| || || |||||||||
Sbjct 477 TATTACTTTATTGAATCGGAGAAGAATCCATCGAAAGATCCGGTGGTGCTTTGGCTCAAT 536
Query 241 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTCGTGTATGAGCATGGTCCATTCAATTTT 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 GGTGGTCCAGGTTGTTCAAGCATGGATGGATTTGTGTATGAGCATGGTCCATTCAATTTC 596
Query 301 GAACTACCAAAGAAAAACAATAGCCTCCCACACTTGCATCTTAATCCTTATAGTTGGTCC 360
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 597 GAACTACCAAAGAAAAACAATAGTCTCCCACTCTTGCATCTTAATCCTTATAGTTGGTCC 656
Query 361 AAGGTATCTAACATTATATATCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 420
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 657 AAGGTCTCTAACATTATATACCTTGATTCTCCTGTTGGTGTGGGATTCTCTTACTCAAAC 716
Query 421 AACATTTCTGATTACATAACCGGTGATACTAAAACCGCGGTTGACTCTCACGCGTTCCTT 480
|| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 717 AATAAGTCTGATTACATAACCGGTGATATTAAAACCGCGGTTGACTCTCACGCGTTCCTT 776
Query 481 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCATTTTTCATCTCTGGAGAA 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 777 CTCAAGTGGTTCCAAATGTTTCCTGAGTTTCAATCAAATCCTTTTTTCATCTCTGGAGAA 836
Query 541 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCAAAGGGATCAAGAAT 600
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||
Sbjct 837 TCTTACGCCGGAGTTTATGTCCCAACTCTTGCTTCAGAAGTTGTCATAGGGAACAAAAAT 896
Query 601 GGGGTAAAGCCGGCTCTTAACTTCAAGGGATATTTGGTTGGAAATGGAGTTGCGGATC-- 658
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 897 GGAGTAAAGCCGGCTCTTAACTTCAAGGGGTATTTGGTTGGAAATGGAGTTGCGGATCCG 956
Query 659 AAGTATTTGATGGAAATGCTCTCGTCCCGTTTGCTCACGGGATGGGACTAATATCTGATG 718
|||| || |||||||||||| | ||||||||||| || |||||||||||||| |||||||
Sbjct 957 AAGT-TT-GATGGAAATGCTTTTGTCCCGTTTGCACATGGGATGGGACTAATCTCTGATG 1014
Query 719 AACTCTTTGAGAACGTTACAAAAGCTTGCCATGGAAATTTCTATGAAATAGAGGGACTTG 778
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 1015 AACTCTTTGAGAACGTTACAAAAGCTTGCAAGGGAAATTTCTATGAAATAGAGGGACTCG 1074
Query 779 AGTGCGAGGAACAGTATACGAAAGTTT-CTGATGATACTGAA--AGGTTGAACATATACA 835
|||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||
Sbjct 1075 AGTGCGAGGAACAGTATACGAAAGTTAAC-GATGATACT-AACCAG-TTGAATATATACA 1131
Query 836 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCTTTCGACATTAGATCACTAC 895
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1132 ACATTCTTGAGCCATGTTACCACGGAACATCGCTATCTGCATTCGACATTAGATCGCTTC 1191
Query 896 CTTCAAGTCTCCTTCAGCTAGGTAAAACCGAACGACCGTTAGCTATAAGAAAAAGAATGT 955
|||||||||||||||||||||| ||||| ||| || |||| ||||||||||||||||||
Sbjct 1192 CTTCAAGTCTCCTTCAGCTAGGCAAAACTGAAAAACGGTTACCTATAAGAAAAAGAATGT 1251
Query 956 TTGGTCGAGCATGGCCAGTTCGTGCGCCTGTTCGTCCAGGCATTGTTCCTAGCTGGTCTC 1015
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1252 TTGGTCGAGCGTGGCCAGTTCGTGCGCCTGTTCATCCAGGCATTGTCCCTAGCTGGTCTC 1311
Query 1016 AACTCCTTGCTGACGTCTCTGTTCCTTGTATTGATGATAGAGTTGCAACAGCGTGGCTGA 1075
|||| ||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1312 AACTTCTTGCCGACGTCACTGTTCCTTGCATTGATGATAGAGTTGCAACAGCGTGGTTGA 1371
Query 1076 ACGATCCAGCGATTAGGAAAGCTATTCATACTAAAGAGGAGAGTGAGATTGGAAGGTGGG 1135
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1372 ACGATCCAGAGATTAGGAAAGCTATTCATACTAAAGAGGAGAGCGAGATTGGAAGGTGGG 1431
Query 1136 AACTCTGCAGTGGGAAACTCTCATTCGATCACGATGCAGGAAGCATGATCAAATTCCATA 1195
|||| ||||||||||||||||||||| ||||||| ||||||||||||||| | |||||||
Sbjct 1432 AACTTTGCAGTGGGAAACTCTCATTCTATCACGACGCAGGAAGCATGATCGATTTCCATA 1491
Query 1196 GAAACCTTACTCTAAGTGGATATAGAGCTCTTATTTACAGCGGGGATCACGATATGTGTG 1255
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1492 GAAACCTTACACTAAGTGGATATAGAGCTCTCATTTACAGCGGGGATCACGATATGTGTG 1551
Query 1256 TTCCATATACTGGCTCTGAAGCTTGGACAAAATCTCTTGGATACAAAGTGATTGATGAAT 1315
|||| | ||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1552 TTCCGTTTACTGGCTCGGAAGCTTGGACAAAATCTCTTGGATACAAAGTTATTGATGAAT 1611
Query 1316 GGAGGGCATGGATATCAAACGACCAAGTCGCAGGGTATACGCAAGGATATGCAAACAATC 1375
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1612 GGAGGGCATGGATATCAAATGACCAAGTCGCGGGGTATACGCAAGGATATGCAAACAATC 1671
Query 1376 TCACATTTTTAACCATCAAGG 1396
|||||||||||||||||||||
Sbjct 1672 TCACATTTTTAACCATCAAGG 1692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5