BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333043
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal... 1005 0.0
AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal... 551 3e-156
> AT4G12890.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7546377-7547641
FORWARD LENGTH=898
Length=898
Score = 1005 bits (544), Expect = 0.0
Identities = 649/699 (93%), Gaps = 9/699 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCTTCTTCAACCAAGTTTG-T--TCTGTTCCCATGTCtttttttAGCTTGC 57
||||||||||||||| |||||||||||| | |||||||||||||||||| |||||||||
Sbjct 35 ATGGCTTCTTCTTCTGCAACCAAGTTTGTTGATCTGTTCCCATGTCTTTTCTTAGCTTGC 94
Query 58 CTCTTTC-TGTTCACATTCTCAAACAACCTCATCGTGGCTGAGAAA-TCCGACAAAGTGA 115
||| ||| ||||||||| ||||||||||||| |||||||||| ||| ||| |||||||||
Sbjct 95 CTC-TTCGTGTTCACATACTCAAACAACCTCGTCGTGGCTGA-AAATTCCAACAAAGTGA 152
Query 116 AGCTCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAGAATTTCATCGTCCATGATC 175
|| ||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 153 AGATCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAAAATTTCATTGTTGATGATC 212
Query 176 TAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACTGATCTCAAGCTTGTTCCATTCG 235
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 213 TAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACCGATCTCAAGCTCGTTCCATTCG 272
Query 236 GTAACGCTCATGTCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAGGAGGAATGCA 295
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 273 GTAACGCTCATATCTCCAATAATCTGACTATTACTTGCCAGCATGGTGAAGAGGAATGCA 332
Query 296 AACTAAACGCCCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAATACA 355
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 333 AACTTAACGCTCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAAATTGCAGTACA 392
Query 356 AGTTCATACAG-TGCGTTGAAAAGGATACGAATGAGTGGGGATCATGTGTTAAAAAATCT 414
||||||||| | ||||||||||| ||||||||||| |||| |||||||||||||||||||
Sbjct 393 AGTTCATAC-GCTGCGTTGAAAAAGATACGAATGAATGGGAATCATGTGTTAAAAAATCT 451
Query 415 GGACGTGAGAAATCCATCAATGATTGTTACAATGGTGATCTCTCTAAAAAGCTGATATTT 474
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 452 GGACGTGAGAAAGCCATCAATGATTGTTACAATGGTGATCTCTCTCAAAAGCTGATACTT 511
Query 475 GGGTATGCAAAACAAACCTCGAGTTTGAAGCCTAAACATGAATACGTTCCATGGGTCACA 534
||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 512 GGGTATGCAAAACTGACCTCGAGTTTGAAGCCAAAACATGAATACGTACCATGGGTCACA 571
Query 535 CTCAACGGCAAACCACTCTATGATAATTACCATAATTTGGTTGCGCAAATCTGCAAAGCG 594
||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||
Sbjct 572 CTCAACGGCAAACCACTCTATGACAATTACCATAATTTGGTCGCACAAGTCTGCAAAGCG 631
Query 595 TACAAAGGAAAGGCTCTACCAAAATTATGCAGTTCCTCTGCCCTGTTTGAGAGGAAAGTG 654
||||||||||||| ||| |||||| ||||||||||||| | | ||| |||||||||||||
Sbjct 632 TACAAAGGAAAGGATCTCCCAAAACTATGCAGTTCCTCGGTCTTGTATGAGAGGAAAGTG 691
Query 655 TCGAAGCTTCAAGTCTCCTATGTAGATGAAGTTATCAAT 693
|| ||| |||||||||||||||||||||||| |||||||
Sbjct 692 TCAAAGTTTCAAGTCTCCTATGTAGATGAAGCTATCAAT 730
> AT4G12900.1 | Symbols: | Gamma interferon responsive lysosomal
thiol (GILT) reductase family protein | chr4:7548820-7549974
FORWARD LENGTH=724
Length=724
Score = 551 bits (298), Expect = 3e-156
Identities = 543/660 (82%), Gaps = 21/660 (3%)
Strand=Plus/Plus
Query 48 tttAGCTTGCCTCTTTCTGTTCACATTCTCAAACA-AC-CTCATCGTGGCT-GAGAAATC 104
||| ||||||||| | || ||||||||||| | || || || |||||||| ||| ||||
Sbjct 46 TTT-GCTTGCCTCCTCCTATTCACATTCTC-ATCACACAATC-TCGTGGCTGGAG-AATC 101
Query 105 CGACAAAGTGAAGCTCAATCTTTACTATGAATCACTTTGTCCCTATTGTCAGAATTTCAT 164
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 102 CGACAAAGTAAAGCTCAATCTTTACTATGAATCACTTTGTCCTTCTTGTCAGAATTTCAT 161
Query 165 CGTCCATGATCTAGGTAAAATCTTTGACTCCGATCTCCTCAAAATCACTGATCTCAAGCT 224
||||||| ||||||| ||||||||| || | ||||||| || |||||| |||||||||||
Sbjct 162 CGTCCATCATCTAGGCAAAATCTTTAACACTGATCTCCACACAATCACCGATCTCAAGCT 221
Query 225 TGTTCCATTCGGTAACGCTCATGTCTCCAATAATCTGACTATTACTTGCCAGCATGGTGA 284
|||||||||||||||| ||||||||| || |||| || | |||||||||||||||||
Sbjct 222 CATTCCATTCGGTAACGCCCATGTCTCCGATGATCTTACCGTCACTTGCCAGCATGGTGA 281
Query 285 GGAGGAATGCAAACTAAACGCCCTCGAAGCTTGCGGTATAAGAACTTTGCCCGATCCGAA 344
|| ||||||||| |||||||||| |||||||||| |||||||||| ||| ||| ||
Sbjct 282 AGAAGAATGCAAATTAAACGCCCTTGAAGCTTGCGCCATAAGAACTTGGCCTAATCAGAG 341
Query 345 ATTGCAATACAAGTTCATACAGTGCGTTGAAAAGGATACGAATGAGTGGGGATCATGTGT 404
|||||| ||||||||||| | ||||||||||| | ||||||| |||| ||| |||||
Sbjct 342 ATTGCACTACAAGTTCATTCGGTGCGTTGAAACTAACACGAATGCTTGGGAATCTTGTGT 401
Query 405 TAAAAAATCTGGACGTGAGAAATCCATCAATGATTGTTACAATGGTGATCTCTCTAAAAA 464
||| || | |||| |||| ||| | || |||||||||||||||||||||||||||||| |
Sbjct 402 TAAGAAGTATGGAGGTGAAAAAGCGATAAATGATTGTTACAATGGTGATCTCTCTAAAGA 461
Query 465 GCTGATATTTGGGTATGCAAAACAAACCTCGAGTTTGAAGCCTAAACATGAATACGTTCC 524
||||||| ||||||||||||| || || | ||||||||| || | ||| ||||||| ||
Sbjct 462 GCTGATACTTGGGTATGCAAACCAGACATTGAGTTTGAAACCGGAGCATAAATACGTACC 521
Query 525 ATGGGTCACACTCAACGGCAAACCACTCTATGATAAT-TACCATAATTTGGTTG-CGCAA 582
|||| | |||||||||||| |||||||||| || ||| | | |||| || | | |
Sbjct 522 ATGGATGACACTCAACGGCGAACCACTCTACGAAAATATTGG-TGATTTTGTGGACTTAG 580
Query 583 ATCTGCAAAGCGTACAAAGGAAAGGCT-CTA-CCA-AAATTATGC-AGTTCCTCTGCCCT 638
||||||||||||| |||||||||||| || || ||| | || | |||||||| | |
Sbjct 581 -TCTGCAAAGCGTATAAAGGAAAGGCTGCTCTCCCTAAACTCTGTTA-TTCCTCTGTCTT 638
Query 639 GTTTGAGAGGA-AAGTGTCGAAGCTTCAAGTCTCCTATGTAGATGAAGTTATCAATCACT 697
|| | |||||| || || | |||| || |||||||||| ||||||| |||||||||||
Sbjct 639 GTCTCAGAGGACAA-TG---ATGCTTGAATTCTCCTATGTTGATGAAGCTATCAATCACT 694
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5