BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg333070

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ATCG01090.1 | Symbols: NDHI | NADPH dehydrogenases | chrC:11924...   953    0.0  


> ATCG01090.1 | Symbols: NDHI | NADPH dehydrogenases | chrC:119244-119762 
REVERSE LENGTH=519
Length=519

 Score =  953 bits (516),  Expect = 0.0
 Identities = 518/519 (99%), Gaps = 0/519 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTCCTATGATAACCGGGTTCATGAATTATGGTCAACAAACCCTACGAGCTGCAAGG  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGCTTCCTATGATAACCGGGTTCATGAATTATGGTCAACAAACCCTACGAGCTGCAAGG  60

Query  61   TATATTGGTCAAGGTTTCATGATTACCTTATCCCACACAAATCGTTTACCTGTAACTATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TATATTGGTCAAGGTTTCATGATTACCTTATCCCACACAAATCGTTTACCTGTAACTATT  120

Query  121  CAATATCCCTATGAAAAATTAATAACATCGGAACGTTTCCGTGGTCGAATCCATTTTGAA  180
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  CAATATCCCTATGAAAAATTAATAACATCGGAACGTTTCCGCGGTCGAATCCATTTTGAA  180

Query  181  TTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTATAGATTTGCCTGTT  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TTTGATAAATGCATTGCTTGTGAAGTATGTGTTCGAGTATGTCCTATAGATTTGCCTGTT  240

Query  241  GTTGATTGGAAATTGGAAACTAATATTCGaaaaaaaCGATTGCTTAATTACAGTATTGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  GTTGATTGGAAATTGGAAACTAATATTCGAAAAAAACGATTGCTTAATTACAGTATTGAT  300

Query  301  TTTGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCAACAAATTGTTTGTCA  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  TTTGGAATTTGTATATTTTGTGGTAATTGTGTTGAGTATTGTCCAACAAATTGTTTGTCA  360

Query  361  ATGACTGAAGAATATGAATTTTCCACTTATGATCGTCACGAATTGAATTATAATCAAATA  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  ATGACTGAAGAATATGAATTTTCCACTTATGATCGTCACGAATTGAATTATAATCAAATA  420

Query  421  GCTTTGGGTCGTTTACCAATGTCAGTAATTGACGATTACACTATTCGAACAATTTGGAAT  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  GCTTTGGGTCGTTTACCAATGTCAGTAATTGACGATTACACTATTCGAACAATTTGGAAT  480

Query  481  TCACCTCAAACAAAAAATGGGGTAAACCCTTTAATTTGA  519
            |||||||||||||||||||||||||||||||||||||||
Sbjct  481  TCACCTCAAACAAAAAATGGGGTAAACCCTTTAATTTGA  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5