BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333078
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA ty... 322 9e-88
ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA ty... 322 9e-88
AT5G66530.1 | Symbols: | Galactose mutarotase-like superfamily... 56.5 1e-07
> ATCG01280.1 | Symbols: YCF2.2 | Chloroplast Ycf2;ATPase, AAA
type, core | chrC:145291-152175 REVERSE LENGTH=6885
Length=6885
Score = 322 bits (174), Expect = 9e-88
Identities = 176/177 (99%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1 ATGTTGCCGCCAAAACCCCGTATTTCTTCTAGACAATCTCCTAATTGTTCCAGAGCAACT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4319 ATGTTGCCGCCAGAACCCCGTATTTCTTCTAGACAATCTCCTAATTGTTCCAGAGCAACT 4260
Query 61 AGAAAAAGATTCTTTAACCAGAAAGAATTCAGTTCAGATGTAGGATACCTATCCAGAAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4259 AGAAAAAGATTCTTTAACCAGAAAGAATTCAGTTCAGATGTAGGATACCTATCCAGAAGT 4200
Query 121 TTTCGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTCGAACTCT 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4199 TTTCGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTCGAACTCT 4143
Score = 106 bits (57), Expect = 1e-22
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 178 AGAAGATGTGTACGAACGATATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4109 AGAAGATGTGTACGAACGATATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAG 4053
> ATCG00860.1 | Symbols: YCF2.1 | Chloroplast Ycf2;ATPase, AAA
type, core | chrC:86474-93358 FORWARD LENGTH=6885
Length=6885
Score = 322 bits (174), Expect = 9e-88
Identities = 176/177 (99%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 1 ATGTTGCCGCCAAAACCCCGTATTTCTTCTAGACAATCTCCTAATTGTTCCAGAGCAACT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4319 ATGTTGCCGCCAGAACCCCGTATTTCTTCTAGACAATCTCCTAATTGTTCCAGAGCAACT 4260
Query 61 AGAAAAAGATTCTTTAACCAGAAAGAATTCAGTTCAGATGTAGGATACCTATCCAGAAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4259 AGAAAAAGATTCTTTAACCAGAAAGAATTCAGTTCAGATGTAGGATACCTATCCAGAAGT 4200
Query 121 TTTCGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTCGAACTCT 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4199 TTTCGCAACTCAATCATGTATGATGGAATCATCAAAGATTTGATCTTTTCGAACTCT 4143
Score = 106 bits (57), Expect = 1e-22
Identities = 57/57 (100%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 178 AGAAGATGTGTACGAACGATATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4109 AGAAGATGTGTACGAACGATATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAG 4053
> AT5G66530.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr5:26553744-26555691 REVERSE LENGTH=1117
Length=1117
Score = 56.5 bits (30), Expect = 1e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Minus
Query 205 GCAACAAGAAGAAGGAAAAGGATTGAATAG 234
||||||||||||||||||||||||||||||
Sbjct 39 GCAACAAGAAGAAGGAAAAGGATTGAATAG 10
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5