BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333080
Length=2454
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containin... 3747 0.0
> AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462599-7467862 FORWARD LENGTH=2802
Length=2802
Score = 3747 bits (2029), Expect = 0.0
Identities = 2321/2461 (94%), Gaps = 23/2461 (1%)
Strand=Plus/Plus
Query 1 ATGATGAAGGAAGACGGCAGAGGAAGGAATCCGCCGTCGCGGCATCTTTGGGTTGGTAAC 60
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 126 ATGATGAAGGAAGACGGTAGAGGAAGGAATCCACCGTCGCGACATCTTTGGGTTGGTAAC 185
Query 61 CTTCCTCATGGGATACCGGAACGAGAATTAGCCGACCGGTTCTTAAGGTTTGGTGAATTG 120
|||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 186 CTTCCTCATGGGATACTTGAACGAGAATTAGCCGATCGGTTCTTAAGATTTGGTGAATTG 245
Query 121 GAGAGCTTAGCATTTCAGCCTGGACGAAGCTATGCATTCGTTAATTTTAAACACGACGAA 180
|| |||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||
Sbjct 246 GAAAGCTTAGCGTTTCAGCCTGGACGAAGCTACGCATTTGTTAATTTTAATCACGATGAG 305
Query 181 GATGCGTTTGCGGCGATCGAGTCGCTTCAAGGCTTCCCACTCTCTGGAAACCCACTTAGG 240
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GATGCGTTCGCTGCGATTGAGTCGCTTCAAGGCTTCCCACTCTCTGGAAACCCACTTAGG 365
Query 241 ATCGAGTTTGCTAAGGCGGAAAAGTCATCAACTGGATCACGCACAGAAGATATATTTCGC 300
|||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct 366 ATCGAGTTTGCTAAGGCGGAAAAGTCATCAACTGGATCACGCACTGATGATATATATCGC 425
Query 301 CATGATGAACAGCGGTCTGCAGCAAGAGGGTCTTCTTTTGTCCAAAAGGACTCCAGGATG 360
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 426 CATGATGAACAGCGGTCTGCAGCAAGAGGGTCGTCTTTTGTCCAAAGGGACTCCAGAATG 485
Query 361 CTTTATGAGAGCCCAGACACATATAGCAAATCAAAAATGAATGATAGAAATGCAGAACCC 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CGTTATGAGAGCCCAGACACATATAGCAAATCAAAAATGAATGATAGAAATGCAGAACCC 545
Query 421 AGTGAGGTACTATATATAGGGTTTCCGGCTTCGTTGAAAGTCGATGATGCGCTCTTGAGG 480
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 546 AGTGAGGTACTATATATAGGGTTTCCTGCTTCGTTGAAAGTAGATGATGCGCTCTTGAGG 605
Query 481 AACGTCTTTTCTTCGTTTGGAGAAATAACCAAGGTCACGGTATTCCCCGGTCGCAGTTAT 540
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 606 AACGTCTTTTCTTCGTTTGGAGAAATAACAAAGGTCACGGTATTCCCTGGTCGCAGTTAT 665
Query 541 GCATTTGTTCAATTCCGAAATCTGATGGCAGCTTGTAAGGCGAAAGAAACTCTTCAGGGA 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 666 GCATTTGTTCAATTCCGAAATCTGATGGCAGCTTGTAAGGCGAAAGAAAGTCTTCAGGGA 725
Query 601 AAGTTGTTTGGCAATCCTCGAGTGCATATTTGTTTTGCAAAGAGTGAACCTTCCTCATCT 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 AAGTTATTTGGCAATCCTCGAGTGCATATTTGTTTTGCAAAGAGTGAACCTTCCTCATCT 785
Query 661 AGCAGTGGAAGGGGTCCATCGAGTAGATCACTCTCTCCGCCTTACAGATCTGTTGATCGA 720
|||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||
Sbjct 786 GGCAGTGGAAGGGGTCCGTCGGGTAGATCACTCTCTCCACCTTACAGATCTGTTGATCGA 845
Query 721 CTGGGATCTTCAGAAGGTTATCTTCAGGATAGAAATTATGGAAGCATCAGCAGAATTCCC 780
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 846 CTGGGATCTTCAGAAGGTTATCTTCAGGATAGAAACTATGGAAGCATCAGCAGAATTCCC 905
Query 781 AGTGTGAGGGAACCACATTACATAGCAGATAGGGATTTGGAAGATTCTGAAGATTACATG 840
||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||
Sbjct 906 AGTGTGAGGGAACCACATTACATAGAAGATAGGGATTTAGAAGATTCTGAAGGTTACATT 965
Query 841 TTTGACAGGAAACGAGTCTCAAGGAACGATGGAGGTCCTGCATATGGAAGGTCGAGATCT 900
||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct 966 TTTAACAGGAAACGAGACTCAAGTAGCGATGGAGGTCCTGCATATGGAAGGTCGAGATCT 1025
Query 901 ACACATAGATTTCCTCAGGATATGCATGAATATCATGGTAGTCCTAGGGAAATGGGTTCG 960
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1026 ACGCATAGATTTCCTCAGGATATGCATGAATATCATGGTAGTCCTGGGGAAATGGGTACT 1085
Query 961 GCATTCCGTGATGATCCTCACAGATTCCAGTCAAGGAGTTCAGTGTATGAAGAGCCATGG 1020
||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1086 TCATTCCGTGATAATCCTCACAGATTCCAGACAAGGAGTTCAGAGTATGAAGAGCCATGG 1145
Query 1021 GATTTACCCGAAGATGACTACTACTACCAGGAAACCAAGAGACTGAAGACAAGATCCGT- 1079
||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
Sbjct 1146 GATCTACCCGAAGATGACTACTACTACCAGGAAATCAAGAGATTGAAGACAAGATCC-TC 1204
Query 1080 GCAGCCTGAGAGGCAGCTCCCAGGGCATCAGCTATCTGGTATAGAGCAAGAAAGACGCCC 1139
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1205 GCAGCCTGAGAGGCAGCTCCCAGGGCATCAGCTTTCTGGTATAGAGCAAGAAAGACGCCC 1264
Query 1140 TTTTTCAAGGGCATCTGCTGATTTTTCCCCAAAAGATGCATTCGAGCGGAACTATGAGGC 1199
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1265 CTTTTCAAGGGCATCTGCTGATTTTTCCCCAAAAGATGCATTTGAGCGGAACTATGAGGC 1324
Query 1200 TGGACAGCTACGATACAAGCAAACAGTTGAGCAGCCGTTAAACCTGGCTATAAGGAACGG 1259
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1325 TGGACAGCTAAGATACAACCAAACAGTTGAGCAGCCGTTAAACCTGGCTATAAGGAATGG 1384
Query 1260 GGACAAGAGTAGCTTACGAGAACCACATGACGAGTTAATGGGAGGTTATGCTCTGCCATC 1319
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1385 GGACAAGAGTAGCTTACGAGAACCACATGAAGAGTTAATGGGAGGTTATCCTCTGCCATC 1444
Query 1320 AATCGTCCCTGAAAGAAAAAGGCACACCCCTGAACTGAATCGACCATCACTAAAGGACTG 1379
| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1445 AGTTGTCCCTGAAAGAAAAAGGTACACCCCTGAACTGAATCGACCATCACTAAAGGACTG 1504
Query 1380 GAACTGGGAAGGGACTATTGCAAAGGGAGGGAATCCCATTTGTCGAGCTAAATGCTTTCC 1439
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1505 GAACTGGGAAGGGACTATTGCTAAGGGAGGCAATCCCATTTGTCGAGCAAAATGCTTTCC 1564
Query 1440 TGTGGGCAAAGTGATGGACATGATACTGCCTGAGTATGTAGATTGCATGGCAAGAACTGG 1499
|||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||||
Sbjct 1565 TGTGGGCAAAGTGATGGACATGATGCTGCCTGAGTTTCTAGATTGCACGGCAAGAACTGG 1624
Query 1500 TTTAGACATGCTGGCCAAGCATTACTACCAATCATCTAAAGCATGGGTGGTTTTCTTTGT 1559
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625 TTTAGACATGCTGGCTAAGCATTACTACCAATCATCTAAAGCATGGGTGGTTTTCTTTGT 1684
Query 1560 TCCTGGAAGTGATGCTGATATTGTGTTTTATAATGAGTTTATGCATTATCTGGAGGAGAA 1619
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1685 TCCTGGAAGTGATGCTGATATCGTGTTTTATGATGAGTTTATGCATTATCTGGAGGAGAA 1744
Query 1620 GCAACGTGCAGCTGTTTCTAAATTGGATGACACAACAACATTGTTCCTCGTGCCTCCATC 1679
|||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 1745 GCAACGGGCAGCTGTTTCTAAATTGGATGACACAACAACGTTGTTTCTGGTGCCTCCATC 1804
Query 1680 TGATTTCTCCGAGAAAGTACTTAAAGTTCCTGGGAAACTTAGCATCTCTGGAGTTATTCT 1739
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1805 TGATTTCTCCGAGAAAGTACTTAAAGTTCCTGGGAAACTAAGCATCTCTGGAGTTATTCT 1864
Query 1740 ACGTTTAGAATGTGGTGGTTCTGGATC---TGGGCCTGTCCAACAGCAAGGTGAGAGAAA 1796
|||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct 1865 ACGTTTAGAATGTGGTGGTTCTGGCTCCGGTGGGCCTGTTCAACAGCAAGGTGAGAGAAA 1924
Query 1797 AGATTCAGACTTGTTAACCTATTATGGTGAAACATCATATGCAGAAGCTAGCGGAGCTTT 1856
|||| |||||||| |||| ||||||||||||||||||||| |||||||||| ||||| ||
Sbjct 1925 AGATACAGACTTGCTAACTTATTATGGTGAAACATCATATTCAGAAGCTAGTGGAGCGTT 1984
Query 1857 TCCTGATGTGGGAAACCCACGTATTCCGGGTCCAACAGCATTTT-TGCTTAGTGCGGGTC 1915
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 1985 TCCTGATGTGGGAAACCCACGTATTCCGGGTCCAACAGC-TTTTCTGCGTAGTGCGGGTC 2043
Query 1916 GTGACGGTCAAAGTGCATCTATGGATCCATACATTGAG-AGCAAGCATGATCAGTTGAGT 1974
||||| |||||||||||| |||||||||||| | ||| | |||||||||||||||||||
Sbjct 2044 GTGACAATCAAAGTGCATCAATGGATCCATACGTCGAGGA-CAAGCATGATCAGTTGAGT 2102
Query 1975 CACAGGTATTCTGGATCGGACTGGCCGCCTCGTGATACCAACCCCAGAAGTTCACAGATG 2034
||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2103 CACCGGTATTCTGGATCGGACTGGCCGCCTCGTGATACAAACCCCAGAAGTTCAC----- 2157
Query 2035 CAACCCTTCATAGATAAAAATACTGTTCAAGAACATAGCGGGTTTGTTCCTGGGAAGCAG 2094
| | ||||||||| | |||||||||| |||| |||||||||||||||||||| |||
Sbjct 2158 C--C--TTCATAGATCA---TACTGTTCAAAAACACAGCGGGTTTGTTCCTGGGAAACAG 2210
Query 2095 CAAAATGCAGATCTTAGTCGTTATCATGATACGGATACTCCAGCCCCATCGGGGTTTCAG 2154
|||||||||||||| |||||||||||||||||||| ||||||| |||| | |||||||||
Sbjct 2211 CAAAATGCAGATCTAAGTCGTTATCATGATACGGAAACTCCAGTCCCAGCAGGGTTTCAG 2270
Query 2155 CCTGAACAGCTTACACATTTAGCTTCCTCGCTGCCCAGACAGCAA-AAGCATGTACAGAA 2213
|||||||||||||||||||||||||||||||| |||||||||||| || || ||||||||
Sbjct 2271 CCTGAACAGCTTACACATTTAGCTTCCTCGCTACCCAGACAGCAACAA-CAGGTACAGAA 2329
Query 2214 CACTCCAAATCAGCCTGAGAGATATGCACCAGAAGGCCGAGCAAGTTTCAGCCATTTGCA 2273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330 CACTCCAAATCAGCCTGAGAGATATGCACCAGAAGGCCGAGCAAGTTTCAGCCATTTGCA 2389
Query 2274 ACACGCGCAGACACCAAGCATACCTCAATTAGTATCTCCAGGAAATCAAAATGTACAGAT 2333
||| |||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||
Sbjct 2390 ACATGCGCAGACACCAAGCATACCTCAATTGGTAACTCCACAAAATCAAAATGTACAGAT 2449
Query 2334 ACAAGGTAGCAATAGCCAACAAGAAGAAGAAACAGAGGCTAATCCACAGAAGCGTCTCCA 2393
|||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 2450 ACAAAGTAGCAACAGCCAACAACAAGAAGAAACAGAGGCTAATCCACAGAAGCGTCTTCA 2509
Query 2394 AGCAACATTGCAGCTAGCAGCTGCACTTCTCCAGCAGATTCAACAAGCTAAACCGAGTTA 2453
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2510 AGCAACATTACAGCTAGCAGCTGCACTTCTCCAGCAGATTCAACAAGCTAAACCGAGTTA 2569
Query 2454 A 2454
|
Sbjct 2570 A 2570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121755170661
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5