BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333087
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12720.4 | Symbols: NUDT7 | MutT/nudix family protein | chr4... 750 0.0
AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix h... 294 8e-79
> AT4G12720.4 | Symbols: NUDT7 | MutT/nudix family protein | chr4:7487301-7489655
FORWARD LENGTH=1391
Length=1391
Score = 750 bits (406), Expect = 0.0
Identities = 422/430 (98%), Gaps = 0/430 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 60
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 ATGGGTACTAGAGCTCAGCAGATTCCTTTACTTGAAGGTGAGACTGATAATTACGATGGT 384
Query 61 GTTACCGTAACCATGGTGGAACCTATGGATGCTGAGGTTTTTACTGAAAGTCTTAGGGCT 120
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 385 GTTACTGTAACCATGGTGGAACCTATGGATTCTGAGGTTTTTACTGAAAGTCTTAGGGCT 444
Query 121 TCGCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCTCTTTCGCATTGGAGAGAAGAGGGGAAGAAGGGAATTTGGATAAAGCTGCCTCTTGGA 504
Query 181 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 TTGGCTAATCTTGTGGAGGCTGCAGTTAGTGAAGGATTTAGATATCACCACGCGGAGCCT 564
Query 241 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACCCCTGATACGATCCCAGCCAATGCT 300
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 565 GAGTACTTGATGCTTGTATCTTGGATCTCTGAAACTCCTGATACAATCCCAGCCAATGCT 624
Query 301 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TCTCATGTTGTAGGTGCTGGTGCTTTGGTCATCAACAAAAATACTAAAGAGGTCCTCGTT 684
Query 361 GTCCAGGAGAGGAGTGGGTTTTTCAAAGCTAAAAATGTGTGGAAGCTGCCTACTGGTGTT 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 685 GTCCAGGAGAGGAGTGGGTTTTTCAAAGATAAAAATGTGTGGAAGCTGCCTACTGGTGTT 744
Query 421 ATCAACGAGG 430
||||||||||
Sbjct 745 ATCAACGAGG 754
Score = 701 bits (379), Expect = 0.0
Identities = 407/421 (97%), Gaps = 0/421 (0%)
Strand=Plus/Plus
Query 429 GGGCGAGGATATATGGACTGGAATAGCTAGGGAAGTGGAAGAAGAAACTGGTATTATTGC 488
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 873 GGGCGAGGATATATGGACTGGAGTAGCTAGGGAAGTGGAAGAAGAAACTGGAATTATTGC 932
Query 489 AGATTTTGTCGAAGTATTGGCTTTCAGGCAAAGCCACAAAGCCATCTTGAAAAAGAAAAC 548
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 933 AGATTTTGTCGAAGTACTGGCTTTCAGGCAAAGCCACAAAGCCATCTTAAAAAAGAAAAC 992
Query 549 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 AGATATGTTTTTCCTGTGTGTCTTAAGTCCGCGCTCTTACGATATTACTGAACAAAAATC 1052
Query 609 TGAGATCTTGCAAGCTAAGTGGATGCCAATCCAAGAGTATGTAGACCAACCATGGAACAA 668
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1053 TGAGATCTTGCAAGCTAAGTGGATGCCGATCCAAGAGTATGTAGACCAACCATGGAACAA 1112
Query 669 GAAAAACGAGATGTTCAAGTTCATGGCCAACATCTGCCAAAAGAAGTGTGAGGAAGAATA 728
||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1113 GAAGAACGAGATGTTCAAGTTCATGGCTAACATTTGCCAAAAGAAGTGTGAGGAAGAATA 1172
Query 729 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAGGAGAGCTTTATCTACTG 788
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1173 CTTGGGATTCGCCATTGTGCCAACTACCACATCATCTGGTAAAGAGAGCTTTATCTACTG 1232
Query 789 CAATGCTGATCATGCCAATCGCCTTAAAGCAACGCGTGACCAAGCCTCCGCTTCTCTCTG 848
|||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||||
Sbjct 1233 CAATGCGGATCATGCCAAGCGCCTTAAAGTATCGCGTGACCAAGCCTCTGCTTCTCTCTG 1292
Query 849 A 849
|
Sbjct 1293 A 1293
> AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix
hydrolase homolog 6 | chr2:1543320-1545462 FORWARD LENGTH=1311
Length=1311
Score = 294 bits (159), Expect = 8e-79
Identities = 569/760 (75%), Gaps = 56/760 (7%)
Strand=Plus/Plus
Query 107 AAAGTCTTAGGGCTTCGCTT-TCGCATTGGAGAGAA-GAGGGGAAGAAGGGAATTTGGAT 164
|||| || || ||||| ||| | | ||||||| || |||||| |||||| || ||| |
Sbjct 424 AAAG-CTGAGAGCTTCACTTGT-GTATTGGAG-CAATCAGGGGACGAAGGGGATATGGTT 480
Query 165 AAAGC-TGCCTCTTGGATTGGCTAATCTT-GTGGAGGCTGCAGTTAG-TGAAGGATTTAG 221
||||| |||| | || ||| | |||||| || | ||||| || ||||| ||| |
Sbjct 481 AAAGCTTGCCGATGGGCTTGAC-AATCTTATTGCA-CCTGCA-AAAGCAGAAGGGTTT-G 536
Query 222 ATAT--CACCACGCGGAGCCTGAGTACTTGATGCTTGTATCTTGGATCTCTGAAACCCCT 279
| | ||||| || ||| || ||| |||||| |||||||||| |||| |||
Sbjct 537 -TGTGCCACCATGCCGAGAGGGAATACACCATGCTTACATCTTGGATCGCTGATGTTCCT 595
Query 280 GA-TACGATCCCAGCCAATGCTTCTCAT-GTTGTAGGTGCTGGTG-CTTTGGTCATCAAC 336
| ||| | || |||||||| |||||| | | | || | ||||| |||| ||| | |||
Sbjct 596 -AGTACTCTTCCTGCCAATGCGTCTCATCG-TATTGGAGTTGGTGCCTTT-GTCCTAAAC 652
Query 337 AAAAATACTAAAGAGGTCCTCGTTGTCCAGGAGA-GGAGTGGGT-TTTTCAAAGCTA-AA 393
|| || || |||||||| || || |||||||||| || | ||| |||||||| || |
Sbjct 653 AAGAAGACCAAAGAGGTGCTTGTGGTCCAGGAGATTGA-T-GGTCATTTCAAAGGTACAG 710
Query 394 AATGTGTGGAAGCTGCCTACTGGTGTTATCAACGAGGGCGAGGATATAT-GGACTGGAAT 452
| |||||||| |||||||| |||||| | || ||||| ||| |||| | ||| |||
Sbjct 711 GA-GTGTGGAAACTGCCTACCGGTGTTGTTAAAGAGGGTGAGAATATTTGGGA-AGGAGC 768
Query 453 AGC-TAGGGAAGTGGAAGAAGAAACTGGTATTATTG-CAGATTTTGTCGAAGTATTGGCT 510
| | ||||||||||||||||||||||||||||| | || | ||||| ||||| |||||
Sbjct 769 A-CTTAGGGAAGTGGAAGAAGAAACTGGTATTAA-GACAAAATTTGTAGAAGTCCTGGCT 826
Query 511 TTCAGGCAAAGCCACAAAGCCAT-CTTGAAAA-AGAAAACAGATATGTTTTTCCTGTGTG 568
|||||| |||||||| |||| || |||| ||| | ||||| ||||| |||||||| ||||
Sbjct 827 TTCAGGGAAAGCCACCAAGC-ATTCTTGGAAATA-AAAACGGATATATTTTTCCTCTGTG 884
Query 569 TCTTA-AGTCCG-CGCTCTTACGATATTACTGAA-CAAAAATCTGAGATCTT-GCAAGCT 624
||| | || | | ||| || || | ||| ||| | ||||||||||| || |||
Sbjct 885 AGTTAGAA-CCAAC-CACTTTTGAAATCAA-GAAACAAGACTCTGAGATCTTAGCT-GCT 940
Query 625 AAGTGGATGCCAATCCAAGAGTATGTAGACCAACCATGGAACAAGAA-AAACGAGA-TGT 682
|||||||||||||| |||| || ||| ||||||| |||||| |||| ||| || | |||
Sbjct 941 AAGTGGATGCCAATTGAAGAATACGTAAACCAACCCTGGAACCAGAAGAAA-GA-ACTGT 998
Query 683 TCAAGTTCATGGCCAACATCTGCCAAAAGA-AGTGTGAGGA-A-G-AATACTTGGGATTC 738
| | ||||||||| ||||||||| |||| | || |||| | | ||||| |||| |||
Sbjct 999 TTAGGTTCATGGCGAACATCTGCTTGAAGAGATTGC-AGGAGATGGAATACATGGGTTTC 1057
Query 739 GCCATTGTGCCA-ACTACCACATCATCTGGTAAGGAGAGCTTTATCTACTGCAATGCTGA 797
||| || || ||||| || |||||||| || ||||||| | | |||||||| | ||
Sbjct 1058 TCCAAAGT-CCTTACTACGACTTCATCTGGGAAAGAGAGCTATCTTTACTGCAACACCGA 1116
Query 798 TCATGCCAATCGCCTTAAAGCAACGCGTGACCAAGCCTCC 837
||| ||||| | ||| || |||||||||| || |||||||
Sbjct 1117 TCACGCCAACCTCCTCAACGCAACGCGTGGCCTAGCCTCC 1156
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5