BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333097
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT1G69860.1 | Symbols: | Major facilitator superfamily protein... 2638 0.0
> AT1G69860.1 | Symbols: | Major facilitator superfamily protein
| chr1:26309628-26312174 FORWARD LENGTH=1668
Length=1668
Score = 2638 bits (1428), Expect = 0.0
Identities = 1590/1669 (95%), Gaps = 8/1669 (0%)
Strand=Plus/Plus
Query 1 ATGGATAATGAGAAAGGGACAA-TT--TCGGATTTAACGACGAGACAAAGGAAGCCTCTT 57
||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACAATGAGAAAGGGACAAGTTCCTCGGATTTAACGACGAGACAAAGGAAGCCTCTT 60
Query 58 GGTTGGAAAGCGATGCCTTATATCATAGGGAATGAGACATTGGAGAGGCTTGCGACATTC 117
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 61 GGTTGGAAAGCGATGCCTTATATCATAGGGAATGAAACATTGGAGAGGCTTGCCACATTC 120
Query 118 GGATTGATGGCCAATTTCATGGTGTATATGGTAAGAGAGTATCATATGGACCAAGTTCAA 177
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTTTGATGGCGAATTTCATGGTGTATATGGTAAGAGAGTATCATATGGACCAAGTTCAA 180
Query 178 GCTGCCACTCTAATCAACACTTGGTCTGCTCTCACCAACTTTGCTCCTATCATCGGAGCT 237
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTGTCACTCTTATCAACACTTGGTCTGCTCTCACCAACTTTGCTCCTATCATCGGAGCT 240
Query 238 TTCATCTCCGACTCATACGCCGGAAAATTTAATACCATTGTCTTCGGTTCCATCGCTGAG 297
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTCATCTCCGACTCCTACACCGGAAAATTTAATACCATTGTCTTCGGTTCCATCGCTGAG 300
Query 298 TTGTTGGGCATGTTGATGTTGACTTTCACGTCTCTGATCCCTAATCTACGACCACCACCT 357
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 301 TTGTTGGGCATGTTGGTGTTGACTTTCACGTCTCTGGTCCCTAATCTACGACCACCACCT 360
Query 358 TGCACTGCCGATCAAATCACTGGAAAATGTATTCGCTATAGCAATTCGCAGTTATACGTT 417
||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 361 TGCACTGCCGACCAAATCACTGGACAATGTATTCCCTATAGCTATTCGCAGTTATACGTT 420
Query 418 TTACTCTCAGGACTTTTCTTGTTATCAGTTGGAACAGGAGGAATCCGCTCATGCAGTGTT 477
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 421 TTACTCTCAGGACTTTTCTTGTTATCAGTTGGAACAGGTGGAATCCGGTCATGCAGTGTT 480
Query 478 CCTTTCAGTCTCGATCAGTTCGATGATTCGACTGAAGAAGGAAGAGAAGGAAGTAGAAGC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTTTCAGTCTCGATCAGTTCGATGATTCGACTGAAGAAGGAAGAGAAGGAAGTAGAAGC 540
Query 538 TTCTTTAGCTGGTACTATACCACTCATACAATCGTGCAGTTAGTTTCAATGACACTAGTG 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TTCTTTAGCTGGTACTATACCACTCATACAATCGTCCAGTTAGTTTCAATGACACTAGTG 600
Query 598 TTGTACGTACAGAACAACATCAGTTGGGCCATTGGATTCGCTATCCCGACCGTTCTCAAT 657
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 601 TTGTACGTACAGAACAACATCAGTTGGGGCATTGGATTCGCAATCCCGACCGTTCTCAAT 660
Query 658 TTGTTTGCGCTTCTTCTGCTTTTTGTGGGAACTCGGTTTTATGTCTTTGTCAAACCCGAA 717
|| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 661 TTTTTTGCGCTTCTTCTGCTTTTTGTGGGTACTCGGTATTATGTCTTTGTCAAACCCGAA 720
Query 718 GGAAGTGTGTTCTCTGGAATTTTCAAGGTTCTTGTGGCTGCTTATAAGAAACGCAATGTA 777
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| | |
Sbjct 721 GGAAGTGTCTTCTCTGGAGTTTTCAAGGTTCTTGTGGCTGCTTATAAGAAACGCAAGGCA 780
Query 778 CGGTTTCCTTCTGGGATTGACTATTATCGACCCTTACTAGAGACAGATTTACAATCAAAT 837
|||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 781 CGGTTTACTTCTGGAATTGACTACCATCAACCCTTACTAGAGACAGATTTACAATCAAAT 840
Query 838 AAACTCGTACTCACTGATCAATTCAGATTTTTGAACAAAGCTGTGATAGTGATGAACAAC 897
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 841 AAACTCGTACTCACTGATCAATTCAGATTCTTGAACAAAGCTGTGATAGTGATGAACAAT 900
Query 898 GATGAAGCTGAAAACGAGGAATGGAGAATTTGCACAGTGAGACAGATAGAGGACATGAAG 957
|||||||||| ||| ||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 901 GATGAAGCTGGAAATGAGGAGTGGAGAACCTGCACAGTGAGACAGATAGAGGACATCAAG 960
Query 958 TCTATAATCAGCATTATTCCAATATTTGTTTCGAGCATTATTGGATTTTTGGCTATGAAC 1017
|| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 961 TCAATAATCAGTATTATTCCAATATTTGCTTCGAGCATTATTGGATTTTTGGCTATGAAC 1020
Query 1018 CAACAACAAACTTTTACAGTCTCACAAGCACTAAAAATGGACCTCCAATTTCCAGGCACT 1077
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CAACAACAGACGTTTACAGTCTCACAAGCACTAAAAATGGACCTCCAATTTCCAGGCACT 1080
Query 1078 TCTTACCTAATCCCTCCTGCTTCTATAACCGTCATATCATTATTAACCATAGGCATATGG 1137
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1081 TCTTACCTAATCCCTCCTGCTTCTATAACCGTCATATCATTATTAAACATAGGTATATGG 1140
Query 1138 CTTCCCTTCTATGAAACCGTTTTGGTCCGACACATTGAAAACATTACAAAACAAGAA-GG 1196
||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||
Sbjct 1141 CTTCCCTTCTATGAAACCGTTTTGGTCCGACACATCGAAAACATTACAAAACAA-AACGG 1199
Query 1197 AGGCATCTCGTTACTTCAAAAAGTCGGCATTGGGAATATTCTCTCCATCTCGACGATGTT 1256
||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1200 AGGTATCTCGTTACTACAAAAAGTCGGCATTGGGAATATTTTCTCCATCTCGACGATGCT 1259
Query 1257 CATATCGGGTATCGTGGAGCGAAAGAGAAGAGATTTATCTCTTACTGGGGTAAACATATC 1316
|||||| ||||| |||||||||||||||||||||||||| |||| ||| ||||| || ||
Sbjct 1260 CATATCCGGTATTGTGGAGCGAAAGAGAAGAGATTTATCGCTTAATGGAGTAAAAATGTC 1319
Query 1317 GGTTTTCTGGCTAACCCCGCAACAAGTACTAATGGGATTTTATCAAGTCTTCACCATTGT 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 GGTTTTCTGGCTAACCCCGCAACAAGTACTAATGGGATTTTATCAAGTCTTCACGATTGT 1379
Query 1377 TGGTCTCACCGAGTTCTTCAACAAACAAGTTCCAATCAACATGAGAAGCATAGGGAACTC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1380 TGGTCTCACCGAGTTCTTCAACAAACAAGTTCCAATCAACATGAGAAGCATTGGGAACTC 1439
Query 1437 GTTGCTTTACTTAGGTTTGTCTCTAGCCAGTTACCTAAGCAGTGCGATGGTAAGCATTGT 1496
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1440 GTTGCTTTACTTAGGTTTGTCTCTAGCCAGTTATCTAAGCAGTGCCATGGTGAGCATTGT 1499
Query 1497 TCATAGTCTGACTGCTCGCGGAAGACGACAGAGTTGGCTAACGGATGATATTGACACAAG 1556
||||||| |||||||||| ||| | |||||||||||||||||||||||||||||| |||
Sbjct 1500 TCATAGTGTGACTGCTCGTGGA-G--GACAGAGTTGGCTAACGGATGATATTGACAAAAG 1556
Query 1557 CAAGTTGGATTATTTCTATTACTTTATTGCCGCTTTAAGCACTCTTAATCTCATCTTCTT 1616
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1557 CAAGTTGGATTGTTTCTATTACTTTATTGCCGCTTTAAGCACTCTTAATTTCATCTTCTT 1616
Query 1617 CTTCTGGTGTGCTCGAAGGTATCGTTATAGAAACTATAGTGATGAACAA 1665
||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1617 CTTCTGGTGTGCTCGAAGGTATCGTTACAGAAACTATAGTAATGAACAA 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5