BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333104 Length=1119 Score E Sequences producing significant alignments: (Bits) Value AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superf... 1356 0.0 AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 93.5 4e-18 > AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:19864527-19865645 FORWARD LENGTH=1119 Length=1119 Score = 1356 bits (734), Expect = 0.0 Identities = 980/1097 (89%), Gaps = 24/1097 (2%) Strand=Plus/Plus Query 29 AACGGTCGCCGGAATCAACCTCAATTTCATCACTTCCCGATGATTTGGTAT-TGAG-TTG 86 ||| ||| |||||||| ||| ||| | |||||||||||||||||| | | |||| | Sbjct 41 AACCGTCACCGGAATCGACCCCAAACCCGTCACTTCCCGATGATTTGAT-TGTGAGCAT- 98 Query 87 CTTCGCACGCGTATCAAGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCG 146 ||| || || || || |||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 99 CTTAGCCCGAGTCTCTAGATTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCG 158 Query 147 AACCCTCGTTGCTTCACCGGAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAG 206 |||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 159 AACCCTCGTTACTTCGCCGGAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAG 218 Query 207 TTGTCTCTATGTGTGCTTAGAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 266 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 219 TTGTCTCTATGTATGCTTAGATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 278 Query 267 CCGAAAACCTAATCAAACCCTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTA 326 ||||||||| | || || || ||||||||||||||||||||||||||||| |||| Sbjct 279 CCGAAAACC---T--AA-CC-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTT 329 Query 327 CGTTTTGGCCCCAATCCCAAATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTC 386 ||||| ||||||||||||||||||||||| | |||| ||||| ||||||| ||||||| Sbjct 330 TGTTTTAGCCCCAATCCCAAATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTC 389 Query 387 TAATATCTATGCCATTGGTGGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTT 446 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 390 TAACATCTATGCCATTGGTGGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTT 449 Query 447 AGACTGCAGGTCTCATACGTGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCC 506 |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| || Sbjct 450 AGACTGCAGGTCTCATACATGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCC 509 Query 507 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTC 566 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 510 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTC 569 Query 567 CTCTAAATGGATGGAGGTTTTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCC 626 ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 570 ATCTAAATGGATGGAGGTTTTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCC 629 Query 627 TTTAGCGGAGAGATTCGTATACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGG 686 ||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| Sbjct 630 TTTAGCGGAGAGATTTATATATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGG 689 Query 687 GGATAAGGTTGTGACCTACAAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCA 746 ||||||||||||||| |||||||| ||||||||||||||||||| || |||||| ||||| Sbjct 690 GGATAAGGTTGTGACTTACAAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCA 749 Query 747 GAGTATGGATTTAGGTTTGTATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTG 806 |||||||||||| || |||| ||||||||| |||||||| |||||||| || || ||||| Sbjct 750 GAGTATGGATTTGGGATTGTTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTG 809 Query 807 TTATCGACCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 866 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 810 TTATCGTCCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 869 Query 867 GGGTTTGAAAGGATTGTCTAAGCTTGCTAGTAATTGTGTTAGGTTGGCGGATTATGGTGG 926 ||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||| Sbjct 870 GGGTTTGAAGGGATTGTCTAAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGG 929 Query 927 AAAGATTGCGATTTTTTGGGACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-G 984 |||||| || |||| |||||||||||| |||| || |||||| ||||||||||| | | Sbjct 930 AAAGATGGCTCTTTTGTGGGACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCG 987 Query 985 ATTTCGTGTGCGGTGATTTCCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGT 1043 ||||||||||||||| ||||||||| || | ||||| |||||||||||| | |||||||| Sbjct 988 ATTTCGTGTGCGGTGGTTTCCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGT 1046 Query 1044 TGAATGGTTTGATGATATGCTTACAGCTATTCCTTA-CTGTTATAGTTTTGTGAATGTTC 1102 ||| |||||||||||||||||||| | || ||| | || ||||| |||||| || || Sbjct 1047 TGAGTGGTTTGATGATATGCTTACGG-TA--CCT-AGCTCTTATAACTTTGTGGGTGCTC 1102 Query 1103 TTGCTGCTACTGTTTGA 1119 ||||||||||| ||||| Sbjct 1103 TTGCTGCTACTCTTTGA 1119 > AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:7082279-7083469 REVERSE LENGTH=1191 Length=1191 Score = 93.5 bits (50), Expect = 4e-18 Identities = 150/195 (77%), Gaps = 19/195 (10%) Strand=Plus/Plus Query 103 AGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTC-GAACCCTCGTTGCTTC 161 ||||||||||||||||||||||||||||| |||||||| | || | | ||||||| || Sbjct 85 AGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGATC 143 Query 162 ACCGGAGCTTTACAAGACTC-GATCTTTCTTCA--AC--CGCACGGAGAGTTGTCTCTAT 216 || ||||||||||||| || || | || | | || ||||| |||| |||||| ||| Sbjct 144 ACTTGAGCTTTACAAGA-TCCGAACGCTCCT-AGGACGACGCACTGAGAATTGTCTTTAT 201 Query 217 GTGTGCTTA-GAATTCCCTCCTG-ACCCTAACCCACGTTGGTTTACACTCTA--CCGAAA 272 || ||||| | ||| | || | | ||||||||||||||| ||||||| ||||| Sbjct 202 CTGAGCTTACGT-TTCAGTTATGGATC-TAACCCACGTTGGTT--CACTCTATGCCGAAG 257 Query 273 ACCTAA-TCAAACCC 286 ||| || || ||||| Sbjct 258 ACC-AACTCGAACCC 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54869195685 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5