BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333104
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superf... 1356 0.0
AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 93.5 4e-18
> AT5G49000.2 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:19864527-19865645 FORWARD LENGTH=1119
Length=1119
Score = 1356 bits (734), Expect = 0.0
Identities = 980/1097 (89%), Gaps = 24/1097 (2%)
Strand=Plus/Plus
Query 29 AACGGTCGCCGGAATCAACCTCAATTTCATCACTTCCCGATGATTTGGTAT-TGAG-TTG 86
||| ||| |||||||| ||| ||| | |||||||||||||||||| | | |||| |
Sbjct 41 AACCGTCACCGGAATCGACCCCAAACCCGTCACTTCCCGATGATTTGAT-TGTGAGCAT- 98
Query 87 CTTCGCACGCGTATCAAGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTCG 146
||| || || || || |||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 99 CTTAGCCCGAGTCTCTAGATTGTACTACCCAATTCTCTCGTTAGTCTCCAAGAGCTCTCG 158
Query 147 AACCCTCGTTGCTTCACCGGAGCTTTACAAGACTCGATCTTTCTTCAACCGCACGGAGAG 206
|||||||||| |||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 159 AACCCTCGTTACTTCGCCGGAGCTATACAAGACTCGATCTTTCTTCAACCGAACGGAGAG 218
Query 207 TTGTCTCTATGTGTGCTTAGAATTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 266
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 219 TTGTCTCTATGTATGCTTAGATTTCCCTCCTGACCCTAACCCACGTTGGTTTACACTCTA 278
Query 267 CCGAAAACCTAATCAAACCCTAACCAACATCACCGAGAAGACAAAGAACTCAAGTGGGTA 326
||||||||| | || || || ||||||||||||||||||||||||||||| ||||
Sbjct 279 CCGAAAACC---T--AA-CC-AA--AACATCACCGAGAAGACAAAGAACTCAAGCGGGTT 329
Query 327 CGTTTTGGCCCCAATCCCAAATCACCATTCCCCTAGTGCGAGTCTCGTTGCGGTTGGGTC 386
||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||||||
Sbjct 330 TGTTTTAGCCCCAATCCCAAATCACCATTCACATAGTTCGAGTATCGTTGCTATTGGGTC 389
Query 387 TAATATCTATGCCATTGGTGGATCCATTGAGAATGCACCGTCTTCTAGGGTCTCAATTTT 446
||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 390 TAACATCTATGCCATTGGTGGATCCATTGAGAATGCACCCTCTTCTAAAGTCTCAATTTT 449
Query 447 AGACTGCAGGTCTCATACGTGGCACGAGGCGCCAAGCATGCGGATGAAGCGGAATTACCC 506
|||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| ||
Sbjct 450 AGACTGCAGGTCTCATACATGGCACGAGGCACCAAGCATGAGGATGAAGCGGAATTATCC 509
Query 507 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGACTTTGATTC 566
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 510 AGCTGCTAATGTTGTTGATGGGAAGATTTATGTAGCAGGAGGCTTGGAAGAGTTTGATTC 569
Query 567 CTCTAAATGGATGGAGGTTTTCGATACGAAGACTCAAACTTGGGAGTTTGTGTTGTGCCC 626
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 570 ATCTAAATGGATGGAGGTTTTCGATATAAAGACTCAAACTTGGGAGTTTGTGTTAAGCCC 629
Query 627 TTTAGCGGAGAGATTCGTATACAGGAGCTTAGTGATTGATGGAGAAATCTACATTTTTGG 686
||||||||||||||| |||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 630 TTTAGCGGAGAGATTTATATATAGGAGCTTGGTGATTGAAGGAGAAATCTACATTTTTGG 689
Query 687 GGATAAGGTTGTGACCTACAAGCCAAAAGAAGATAGATGGGGAGATGAAGGAGAGCATCA 746
||||||||||||||| |||||||| ||||||||||||||||||| || |||||| |||||
Sbjct 690 GGATAAGGTTGTGACTTACAAGCCTAAAGAAGATAGATGGGGAGGTGTAGGAGAACATCA 749
Query 747 GAGTATGGATTTAGGTTTGTATTTTCATTCGTATTGCGTTATAGATAACGTTCTCTATTG 806
|||||||||||| || |||| ||||||||| |||||||| |||||||| || || |||||
Sbjct 750 GAGTATGGATTTGGGATTGTTTTTTCATTCTTATTGCGTGATAGATAATGTACTGTATTG 809
Query 807 TTATCGACCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 866
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 TTATCGTCCTGGTGGAATCAAATGGTATGAATCAGAGAAAAGATCGTGGAGGAAGTTGAG 869
Query 867 GGGTTTGAAAGGATTGTCTAAGCTTGCTAGTAATTGTGTTAGGTTGGCGGATTATGGTGG 926
||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||
Sbjct 870 GGGTTTGAAGGGATTGTCTAAGCTTGCTAGTAGCTGTGTTAAGTTAGCGGATTATGGTGG 929
Query 927 AAAGATTGCGATTTTTTGGGACAAGTAT-TCCCCTTCTAGTGGTTATAAGAGTCATAT-G 984
|||||| || |||| |||||||||||| |||| || |||||| ||||||||||| | |
Sbjct 930 AAAGATGGCTCTTTTGTGGGACAAGTATATCCC-TTGTAGTGGGAATAAGAGTCAT-TCG 987
Query 985 ATTTCGTGTGCGGTGATTTCCCTTG-GAAGTTGCAAAAATCAGGGTATTCGAGGAAAGGT 1043
||||||||||||||| ||||||||| || | ||||| |||||||||||| | ||||||||
Sbjct 988 ATTTCGTGTGCGGTGGTTTCCCTTGAGA-GATGCAAGAATCAGGGTATTAGGGGAAAGGT 1046
Query 1044 TGAATGGTTTGATGATATGCTTACAGCTATTCCTTA-CTGTTATAGTTTTGTGAATGTTC 1102
||| |||||||||||||||||||| | || ||| | || ||||| |||||| || ||
Sbjct 1047 TGAGTGGTTTGATGATATGCTTACGG-TA--CCT-AGCTCTTATAACTTTGTGGGTGCTC 1102
Query 1103 TTGCTGCTACTGTTTGA 1119
||||||||||| |||||
Sbjct 1103 TTGCTGCTACTCTTTGA 1119
> AT4G11770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:7082279-7083469 REVERSE LENGTH=1191
Length=1191
Score = 93.5 bits (50), Expect = 4e-18
Identities = 150/195 (77%), Gaps = 19/195 (10%)
Strand=Plus/Plus
Query 103 AGATTGTACTACCCGATTCTCTCCTTAGTCTCCAAGAGCTGTC-GAACCCTCGTTGCTTC 161
||||||||||||||||||||||||||||| |||||||| | || | | ||||||| ||
Sbjct 85 AGATTGTACTACCCGATTCTCTCCTTAGTTTCCAAGAGAT-TCCGCTCTCTCGTTGGATC 143
Query 162 ACCGGAGCTTTACAAGACTC-GATCTTTCTTCA--AC--CGCACGGAGAGTTGTCTCTAT 216
|| ||||||||||||| || || | || | | || ||||| |||| |||||| |||
Sbjct 144 ACTTGAGCTTTACAAGA-TCCGAACGCTCCT-AGGACGACGCACTGAGAATTGTCTTTAT 201
Query 217 GTGTGCTTA-GAATTCCCTCCTG-ACCCTAACCCACGTTGGTTTACACTCTA--CCGAAA 272
|| ||||| | ||| | || | | ||||||||||||||| ||||||| |||||
Sbjct 202 CTGAGCTTACGT-TTCAGTTATGGATC-TAACCCACGTTGGTT--CACTCTATGCCGAAG 257
Query 273 ACCTAA-TCAAACCC 286
||| || || |||||
Sbjct 258 ACC-AACTCGAACCC 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5