BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg333124 Length=1404 Score E Sequences producing significant alignments: (Bits) Value AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits... 1376 0.0 AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 787 0.0 > AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits to 23768 proteins in 1327 species: Archae - 108; Bacteria - 3952; Metazoa - 17076; Fungi - 3614; Plants - 1643; Viruses - 204; Other Eukaryotes - 16446 (source: NCBI BLink). | chr5:19711542-19715910 FORWARD LENGTH=2538 Length=2538 Score = 1376 bits (745), Expect = 0.0 Identities = 842/889 (95%), Gaps = 5/889 (1%) Strand=Plus/Plus Query 29 AGGACAAGTACaaggaaaagaagcataagaaggataaagaaaagaaagagggtaaagaga 88 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 674 AGGACAAGTACAAGGAAAAGAAGCATAAGAAGGATAAAGAAAAGAGAGAGGGTAAAGAGA 733 Query 89 aaaagagtaaagatagaagcaaagacaaacagaaggaaagaaaggagaaaaaagacaaac 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 AAAAGAGTAAAGATAGAAGCAAAGACAAACAGAAGGAAAGAAAGGAGAAAAAAGACAAAC 793 Query 149 ataaagatcggaaagaaaaggagaaagataaagaaaaaagcaaacctttggaggagaaga 208 ||||||||| |||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 794 ATAAAGATCAGAAAGACAAGGAGAAAGGTAAAGAAAAAGGCAAACCTTTGGAGGAGAAGA 853 Query 209 aagCTGAGGTGCTGACAAACACCGGGCACAGAGATAATTTTGTAACAGATACCGTGCAGA 268 |||||||| |||||||||| ||||||||||||| ||| |||||||||||| ||||||| Sbjct 854 AAGCTGAGCTGCTGACAAATGCCGGGCACAGAGAGAATCGTGTAACAGATACGGTGCAGA 913 Query 269 AGAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 328 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 914 ATAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 973 Query 329 AAGAAGCAACAGGAAGTCAGAGTGCACAAAAGATTGATCATCCTAACCaaaaaaaTGTAG 388 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 974 AAGAAGCAACAGGAAGTCAGAGTGCACAAAGGATTGATCATCCTAACCAAAAAAATGTAG 1033 Query 389 GAATAACAGGAAAAGCATTTGTGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 448 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1034 GAATAACAGAAAAAGCATTTGAGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 1093 Query 449 CCAATAAGAGAATCAATACCCAAAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 508 ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 1094 ACAATAAGAGAATCAATAACCAGAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 1153 Query 509 TTTCTCGAGTATCATTTGGTGCTGATCAGAAAAGAGCTGAGGTTATGGGTAAACCAATGG 568 |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| Sbjct 1154 TTTCTCGAGTATCATTTGGTGCAGATCATAAAAGAGCTGAGGTGATGGGTAAACCAATGG 1213 Query 569 AGACCAGAGACCAGATGAGGCAAACAGAATCAGCTGAGAAGATTCACTGCAAGGAAAGTG 628 ||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||| || Sbjct 1214 AGAACAGAGACCAGGTGAGGCAAACAGAATCAGCTGAGAAGAGTCACCGCAAGGAAAATG 1273 Query 629 TGACCAAGAGTGATAAACCaaggga--a-gaaggggtaaagaagagtgaagcaaaggata 685 ||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||| Sbjct 1274 TGACCAAGAGTGAGAAACCAAGGGATCAAGAAGGGGTAAAGAAGACTGAAGCAAAGGATA 1333 Query 686 aagacagaaataaagagaagaaagaggaaaaaacagagtcaataaataaaactcgtcagg 745 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1334 AAGACAGAAATAAAGAGAAGAAAGAGGAAAAAACAGAGTCGATAAATAAAACTCGTCAGG 1393 Query 746 agaaaccaaaaTTGATAGGAGGGCCCAAATTAGAAGAAAGAGAAAAGGACTCTCTGGATA 805 ||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |||| Sbjct 1394 AGAAACCAAAATTGATACGAGGGCCCAAGTTAGAGGAAAGAGAAAAGGACTCTCCGGATT 1453 Query 806 TAAGAAATTGCAAACTGCCTGAGGTTTCACGGGCGAGCGTCAAGAACCTT-ATTACCGAG 864 ||||||||||||| |||||||| ||||||||| | ||| ||||||||||| | |||||| Sbjct 1454 TAAGAAATTGCAAGCTGCCTGACGTTTCACGGACAAGCATCAAGAACCTTCAC-ACCGAG 1512 Query 865 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCTTGTATG 913 |||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1513 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCCTGTATG 1561 Score = 813 bits (440), Expect = 0.0 Identities = 476/494 (96%), Gaps = 0/494 (0%) Strand=Plus/Plus Query 911 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 970 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1678 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 1737 Query 971 AAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCAAG 1030 |||||||||||| | ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1738 AAAATGGAAGAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCAAG 1797 Query 1031 GAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGGAG 1090 ||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 1798 GAACAACTTGCAAGCCACAAGTCAAAGAAGTCAGAATTAATGGTTTTGCTGTCTCTGGAG 1857 Query 1091 AAAAACATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1150 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 AAAAACGTAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1917 Query 1151 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1977 Query 1211 TCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTACTTG 1270 || ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1978 TCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTACTTG 2037 Query 1271 GTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAATCCT 1330 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 2038 GTCAGTCGGGTATCAAATTAAAAAGGGCGAGAACAGATCCTCCAGATTCTGGCGAATCCT 2097 Query 1331 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTTATG 1390 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 2098 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTTATG 2157 Query 1391 TAGTTCCATTTTAG 1404 |||||||||||||| Sbjct 2158 TAGTTCCATTTTAG 2171 > AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469312 REVERSE LENGTH=614 Length=614 Score = 787 bits (426), Expect = 0.0 Identities = 474/497 (95%), Gaps = 3/497 (1%) Strand=Plus/Plus Query 910 TAT-GAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGT 968 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 119 TATGGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTGTGTACCATCTGT 178 Query 969 GGAAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCA 1028 ||||||||||| || | ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 179 GGAAAATGGAATAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCA 238 Query 1029 AGGAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGG 1088 ||||| ||||||||||||||||| ||||||||||||||||| |||||| |||||||||| Sbjct 239 AGGAACAACTTGCAAGCCACAAGTTAAAGAAGTTAGAATTAATGGTTTTACTGTCTCTGG 298 Query 1089 AGAAAAA-CATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 1147 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 A-AAAAAGCATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 357 Query 1148 AGGAAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 1207 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 AGGAAAATGGTGAACCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 417 Query 1208 TACTCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTAC 1267 ||||| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||| Sbjct 418 TACTCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTAC 477 Query 1268 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAAT 1327 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 478 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACAGATCCTCCAGATTCTGGCGAAT 537 Query 1328 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTT 1387 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 538 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTT 597 Query 1388 ATGTAGTTCCATTTTAG 1404 ||||||||||||||||| Sbjct 598 ATGTAGTTCCATTTTAG 614 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69176351010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5