BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333124
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits... 1376 0.0
AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 787 0.0
> AT5G48610.1 | Symbols: | unknown protein; Has 43043 Blast hits
to 23768 proteins in 1327 species: Archae - 108; Bacteria
- 3952; Metazoa - 17076; Fungi - 3614; Plants - 1643; Viruses
- 204; Other Eukaryotes - 16446 (source: NCBI BLink). | chr5:19711542-19715910
FORWARD LENGTH=2538
Length=2538
Score = 1376 bits (745), Expect = 0.0
Identities = 842/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 29 AGGACAAGTACaaggaaaagaagcataagaaggataaagaaaagaaagagggtaaagaga 88
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 674 AGGACAAGTACAAGGAAAAGAAGCATAAGAAGGATAAAGAAAAGAGAGAGGGTAAAGAGA 733
Query 89 aaaagagtaaagatagaagcaaagacaaacagaaggaaagaaaggagaaaaaagacaaac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 AAAAGAGTAAAGATAGAAGCAAAGACAAACAGAAGGAAAGAAAGGAGAAAAAAGACAAAC 793
Query 149 ataaagatcggaaagaaaaggagaaagataaagaaaaaagcaaacctttggaggagaaga 208
||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 794 ATAAAGATCAGAAAGACAAGGAGAAAGGTAAAGAAAAAGGCAAACCTTTGGAGGAGAAGA 853
Query 209 aagCTGAGGTGCTGACAAACACCGGGCACAGAGATAATTTTGTAACAGATACCGTGCAGA 268
|||||||| |||||||||| ||||||||||||| ||| |||||||||||| |||||||
Sbjct 854 AAGCTGAGCTGCTGACAAATGCCGGGCACAGAGAGAATCGTGTAACAGATACGGTGCAGA 913
Query 269 AGAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 328
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 ATAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 973
Query 329 AAGAAGCAACAGGAAGTCAGAGTGCACAAAAGATTGATCATCCTAACCaaaaaaaTGTAG 388
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 974 AAGAAGCAACAGGAAGTCAGAGTGCACAAAGGATTGATCATCCTAACCAAAAAAATGTAG 1033
Query 389 GAATAACAGGAAAAGCATTTGTGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 448
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GAATAACAGAAAAAGCATTTGAGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 1093
Query 449 CCAATAAGAGAATCAATACCCAAAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 508
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1094 ACAATAAGAGAATCAATAACCAGAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 1153
Query 509 TTTCTCGAGTATCATTTGGTGCTGATCAGAAAAGAGCTGAGGTTATGGGTAAACCAATGG 568
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1154 TTTCTCGAGTATCATTTGGTGCAGATCATAAAAGAGCTGAGGTGATGGGTAAACCAATGG 1213
Query 569 AGACCAGAGACCAGATGAGGCAAACAGAATCAGCTGAGAAGATTCACTGCAAGGAAAGTG 628
||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 1214 AGAACAGAGACCAGGTGAGGCAAACAGAATCAGCTGAGAAGAGTCACCGCAAGGAAAATG 1273
Query 629 TGACCAAGAGTGATAAACCaaggga--a-gaaggggtaaagaagagtgaagcaaaggata 685
||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 1274 TGACCAAGAGTGAGAAACCAAGGGATCAAGAAGGGGTAAAGAAGACTGAAGCAAAGGATA 1333
Query 686 aagacagaaataaagagaagaaagaggaaaaaacagagtcaataaataaaactcgtcagg 745
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1334 AAGACAGAAATAAAGAGAAGAAAGAGGAAAAAACAGAGTCGATAAATAAAACTCGTCAGG 1393
Query 746 agaaaccaaaaTTGATAGGAGGGCCCAAATTAGAAGAAAGAGAAAAGGACTCTCTGGATA 805
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 1394 AGAAACCAAAATTGATACGAGGGCCCAAGTTAGAGGAAAGAGAAAAGGACTCTCCGGATT 1453
Query 806 TAAGAAATTGCAAACTGCCTGAGGTTTCACGGGCGAGCGTCAAGAACCTT-ATTACCGAG 864
||||||||||||| |||||||| ||||||||| | ||| ||||||||||| | ||||||
Sbjct 1454 TAAGAAATTGCAAGCTGCCTGACGTTTCACGGACAAGCATCAAGAACCTTCAC-ACCGAG 1512
Query 865 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCTTGTATG 913
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1513 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCCTGTATG 1561
Score = 813 bits (440), Expect = 0.0
Identities = 476/494 (96%), Gaps = 0/494 (0%)
Strand=Plus/Plus
Query 911 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 1737
Query 971 AAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCAAG 1030
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1738 AAAATGGAAGAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCAAG 1797
Query 1031 GAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGGAG 1090
||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1798 GAACAACTTGCAAGCCACAAGTCAAAGAAGTCAGAATTAATGGTTTTGCTGTCTCTGGAG 1857
Query 1091 AAAAACATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1150
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 AAAAACGTAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1917
Query 1151 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1977
Query 1211 TCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTACTTG 1270
|| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1978 TCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTACTTG 2037
Query 1271 GTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAATCCT 1330
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2038 GTCAGTCGGGTATCAAATTAAAAAGGGCGAGAACAGATCCTCCAGATTCTGGCGAATCCT 2097
Query 1331 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTTATG 1390
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 2098 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTTATG 2157
Query 1391 TAGTTCCATTTTAG 1404
||||||||||||||
Sbjct 2158 TAGTTCCATTTTAG 2171
> AT5G43490.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:17468471-17469312
REVERSE LENGTH=614
Length=614
Score = 787 bits (426), Expect = 0.0
Identities = 474/497 (95%), Gaps = 3/497 (1%)
Strand=Plus/Plus
Query 910 TAT-GAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGT 968
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 119 TATGGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTGTGTACCATCTGT 178
Query 969 GGAAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCA 1028
||||||||||| || | ||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 179 GGAAAATGGAATAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCA 238
Query 1029 AGGAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGG 1088
||||| ||||||||||||||||| ||||||||||||||||| |||||| ||||||||||
Sbjct 239 AGGAACAACTTGCAAGCCACAAGTTAAAGAAGTTAGAATTAATGGTTTTACTGTCTCTGG 298
Query 1089 AGAAAAA-CATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 1147
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 A-AAAAAGCATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCA 357
Query 1148 AGGAAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 1207
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGGAAAATGGTGAACCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGA 417
Query 1208 TACTCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTAC 1267
||||| ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 418 TACTCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTAC 477
Query 1268 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAAT 1327
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 478 TTGGTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACAGATCCTCCAGATTCTGGCGAAT 537
Query 1328 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTT 1387
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 538 CCTTGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTT 597
Query 1388 ATGTAGTTCCATTTTAG 1404
|||||||||||||||||
Sbjct 598 ATGTAGTTCCATTTTAG 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69176351010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5