BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333130
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-... 451 5e-126
> AT2G33200.1 | Symbols: | F-box family protein | chr2:14069541-14070671
FORWARD LENGTH=1131
Length=1131
Score = 451 bits (244), Expect = 5e-126
Identities = 571/721 (79%), Gaps = 53/721 (7%)
Strand=Plus/Plus
Query 10 GTTCATGATTGGTCAAAGCTTTG-CGACGATCTTTTGCGATCAATCCTCGAAGGCTTGAA 68
||| |||||||||| |||||||| | ||||| ||||||||| || |||||| |||||
Sbjct 14 GTT-ATGATTGGTCCAAGCTTTGTC-ACGATATTTTGCGATTGATACTCGAAAGCTTG-- 69
Query 69 CACTACCAAGGATTTTCATCGAGCGAGTAGTGTTTGCTCAAACTGGTATACCA-TTTCAA 127
||||| |||||||| ||||||||| || | |||||||| |||||||| | || ||| |
Sbjct 70 CACTA-CAAGGATTATCATCGAGCAAGAACCGTTTGCTCTAACTGGTACA-CAGCTTCCA 127
Query 128 GAACTTGTAAGCGACCTATAAATCTGTTTCCATGGCAAATCCTATTCAA-AGAGAATTCA 186
||| ||||||||||| ||||| |||||||| |||| |||||| | ||| ||||
Sbjct 128 CAACGTGTAAGCGACC------TCTGTATCCATGGCGAATCAAATTCAACA-AGATTTCA 180
Query 187 ACTTTGCTCTTTG-TCCCTGAAGAAAACAAAAAT-CACGAAATTCAACATCCTGGAATCG 244
|||| ||||| | ||| | |||| || || || ||||||||||||||||| |||||||
Sbjct 181 ACTTCACTCTTCGATCCAAG-AGAAGAC-AAGATCCACGAAATTCAACATCCCGGAATCG 238
Query 245 ACTTTTCGGATAGGTATGTTCTTACTAGCTGCAGCAATTGGCTCTTGATGATTGATTATA 304
| || || |||||| |||||||| ||||||||||||||||| |||||||| |||||| |
Sbjct 239 AATTCTCCGATAGGAATGTTCTTGCTAGCTGCAGCAATTGGTTCTTGATGGTTGATTCTG 298
Query 305 ATGTAGAtttttttCTCATAAACG-TGTTCACTCGTGAGAGAATCAATCTTCCATCCATA 363
| |||| || | |||| | || | | ||||||||||||||||||||||||||||| ||
Sbjct 299 GTTTAGAATTCTATCTCCTGAATGCT-TTCACTCGTGAGAGAATCAATCTTCCATCGATG 357
Query 364 GAGTCATCGATTATTGGTC--------TTGGTCAA-G------C----A--CATTTCGTC 402
|||||||||||| ||||| |||| || | | | |||||| ||
Sbjct 358 GAGTCATCGATTCTTGGTAAAGAGAGATTGGAAAAAGAAGTTGCGTGGAAACATTTCATC 417
Query 403 GAGCCTACCGACATAATTTCTGCGAAAAAACAAGCTTGTCTTTGGATTGATGAGACAACA 462
|||| ||| ||||| || ||| | || ||||| |||||||||||||| |||||| ||||
Sbjct 418 GAGCGTACAGACATCATCTCTACCAAGAAACAGGCTTGTCTTTGGATAAATGAGAGAACA 477
Query 463 AAGGATTATGTTGTTGCTTGGAGTTAT-AACCAATACCACTTATTCA-TAAACAAGAAAG 520
|||||||||||| ||||||||| || || || || | || |||| | | ||||||||
Sbjct 478 GGGGATTATGTTGTGGCTTGGAGT-ATCAAACAGCACTATTTGTTCACTTA-CAAGAAAG 535
Query 521 GAGATGATTCATGGTCGAGTCTTGAAGACACAAAGTGTGTGTATATTGCTT-GTAATAAA 579
||||||||||||||| || |||||||| ||| |||||||||| ||| |||| | |||||
Sbjct 536 GAGATGATTCATGGTTGAATCTTGAAGGCACTAAGTGTGTGTCTATGGCTTTG-AATAAG 594
Query 580 GACTACAAGCTTTATGTGTATACGTTAGATAGTTGCATCAAGATTTTTGATATATCTGGT 639
||||||||||||||||||||| | ||||||| | |||||||||||||||| ||| ||||
Sbjct 595 GACTACAAGCTTTATGTGTATGCATTAGATAACTCCATCAAGATTTTTGATTTATATGGT 654
Query 640 GA-TTCCCCT-GAAGAGATTGTCGAAGAAAACCCGTACCGTAACCATCCGTTTTGCTTTC 697
|| || || | | ||||||||||| || || ||||| || |||||||||||| ||||||
Sbjct 655 GAGTTTCC-TAGT-GAGATTGTCGAGGAGAATCCGTATCGCAACCATCCGTTTAGCTTTC 712
Query 698 G 698
|
Sbjct 713 G 713
Score = 254 bits (137), Expect = 2e-66
Identities = 260/317 (82%), Gaps = 17/317 (5%)
Strand=Plus/Plus
Query 709 GCGGTTACTAGCTTTGGAGAGGTTTTGATGATCGTGAGCTTGAAAGGGTTGGAAAATAAA 768
||| |||||| || ||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 757 GCGATTACTAACTCTGGAGAGGTTTTGATGATCGTGAGCTTAAAAGGGTTAGAAGATAAG 816
Query 769 CGTTTGTTTTACATCTATAAGAT-GAATTTGGAGAAAAGTAATTGGGAAAGAGTAGATTC 827
||||||||||| || |||||||| || |||||| | |||| ||||| |||||||||||
Sbjct 817 CGTTTGTTTTATATATATAAGATGGATTTTGGA-AGTTGTAACTGGGAGAGAGTAGATTC 875
Query 828 TCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTCACGATTAGAGCACCGATGAAAGA 887
|||||||||||||||||||||||||||||||||||| || || ||||||||||| |||
Sbjct 876 TCTTGGAGGTGAGATGTTGATATTTGGTCATGGGGTTACCATAAGAGCACCGATCTTAGA 935
Query 888 TATTAGTAGTTTG--A-----G--TGATTCAAtttttttCTC-CGGTGAAGATCTCTGGC 937
||||| | ||||| | | ||||||||| | |||| | |||||| ||||| ||||
Sbjct 936 TATTAATGGTTTGGGAATCAAGAGTGATTCAATCTGTTTC-CGCGGTGATGATCTTTGGC 994
Query 938 CAGGAAGTTATCCGTATAATCCCA--ACACAACTTTAT-TGCGGTGTGTTCGATCTTACG 994
|| ||| | | | || ||||| ||||||| | || |||||||| || |||||| ||
Sbjct 995 CACTTAGTCAGCTTTTTATTCCCATCACACAACCT-ATGTGCGGTGTATTTGATCTTGCG 1053
Query 995 ACAAGTACAATCACATG 1011
|||||||||||||||||
Sbjct 1054 ACAAGTACAATCACATG 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50736488470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5