BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333145
Length=1101
Score E
Sequences producing significant alignments: (Bits) Value
AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypepti... 1679 0.0
> AT5G50750.1 | Symbols: RGP4 | reversibly glycosylated polypeptide
4 | chr5:20640992-20642660 FORWARD LENGTH=1359
Length=1359
Score = 1679 bits (909), Expect = 0.0
Identities = 1040/1103 (94%), Gaps = 10/1103 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGGCTACAACCTCAAAGGTATCGAAGCGGCACCTTTGAAGGACGATGTGGATATT 60
|||||||||||||||||| ||| ||||||||||||||||||||| |||||| ||||||||
Sbjct 75 ATGGCGGGCTACAACCTCGAAGCTATCGAAGCGGCACCTTTGAAAGACGATCTGGATATT 134
Query 61 GTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAACAATGGAGACCATTTTTGCAGCAT 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 135 GTGATCCCAACCATCAGAAGCCTCGACTTTCTAGAGCAATGGAGACCATTTTTGCACCAT 194
Query 121 TACCACTTGATCATTGTCCAAGATGGAGACCCTTCGATCAAGATTAAAGTTCCCGAGGGT 180
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 195 TACCACCTGATCATTGTCCAAGATGGAGACCCTTCCATCAAGATCCGAGTTCCCGAGGGT 254
Query 181 TATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGGTCCTAGAGCTAAT 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 255 TATGACTACGAGCTCTACAACCGTAATGATATCAACAGGATCCTTGGTCCAAGAGCTAAT 314
Query 241 TGTATCTCATACAAAGATGGTGGTTGTCGTTGCTTCGGCTTCATGGTTTCGAAAAAGAAG 300
|||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 315 TGTATCTCCTACAAAGATGGTGGTTGTCGCTGCTTTGGCTTCATGGTTTCTAAAAAGAAG 374
Query 301 TATATCTACACCATTGATGATGACTGCTTTGTGGCAAAGGATCCAAGTGGGAAAGAGATC 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 375 TATATCTACACCATTGATGATGATTGCTTTGTGGCAAAGGATCCAAGTGGGAAAGACATC 434
Query 361 AATGTGATAGCTCAGCACATAAGGAACCTTGAAACACCTTCAACACCACACTACTTTAAC 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 435 AATGTGATAGCTCAGCACATAAAGAACCTTGAAACACCTTCAACACCACACTACTTCAAC 494
Query 421 ACTCTCTATGACCCTTTTAGAGAAGGAACTGATTTCGTCAGAGGGTATCCTTTCAGTTTA 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 495 ACTCTCTATGACCCTTTTAGAGATGGAACTGATTTCGTCAGAGGGTATCCTTTCAGTCTA 554
Query 481 AGGGAAGAAGGTGTCCAAACTGCCATATCTCATGGGCTTTGGCTCAACATCCCTGATTAC 540
| || |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 555 A-GG--GAAGGTGTCCAAACCGCCATATCTCATGGTCTTTGGCTCAACATCCCTGACTAT 611
Query 541 GATGCTCCAACCCAACTCGTGAAGCCCCGGGAACGGAACACGAGGTATGTTGATGCAGTG 600
||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 612 GATGCCCCAACCCAACTTGTGAAGCCCCGCGAACGTAACACGAGGTATGTGGATGCAGTA 671
Query 601 ATGACAATCCCAAAAGGAGTATTGTACCCAATGTGTGGCATGAATCTTGCTTTCAATAGA 660
|||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 672 ATGACAATTCCAAAAAGAGTATTGTACCCAATGTGTGGTATGAATCTTGCTTTCAATAGA 731
Query 661 GAGCTTGTTGGGCCTGCTATGTACTTTGGCCTTATGGGTGAAGGCCAGCCCATTTCTCGG 720
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 732 GAGCTTGTTGGACCTGCTATGTACTTTGGACTTATGGGTGAAGGCCAGCCCATTTCTCGG 791
Query 721 TACGATGACATGTGGGCTGGTTGGGCAGCCAAGGTGGTGTGTGACCAGTTAGGCTTTGGG 780
||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 792 TACGATGACATGTGGGCTGGTTGGGCAGCAAAGGTGGTGTGTGACCACTTGGGCTTTGGG 851
Query 781 GTCAAGACTGGGT-TGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCGTTCGTGAACCT 839
||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 852 GTCAAGACT-GGTCTGCCGTATCTGTGGCACAGCAAAGCCAGTAACCCATTCGTGAACCT 910
Query 840 GAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCTTCCAAAACCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GAAGAAAGAGCATAAGGGACTCCACTGGCAAGAAGATATGGTTCCTTTCTTCCAAAACCT 970
Query 900 TTGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGCTATATGGAAATTTCGAAGATGAC 959
| |||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 971 TCGTCTCTCGAAAGAATCTGACACTGCAGCTAAATGTTATATGGAAATTTCAAATATGAC 1030
Query 960 AAAAGAAAAGCTTACTAAAGTGGATCCTTACTTTGAGAAATTGGCAGATGCAATGGTCAC 1019
|||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1031 AAAAGAAAAGCTCACTAAAGTGGATCCTTACTTTGAGAAGTTGGCTGATGCAATGGTGGT 1090
Query 1020 TTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAATGAGGC-GTTCAGCGATG 1078
|||||||||||||||||||||||||||||||||||||||||| || || | |||||||
Sbjct 1091 TTGGATTGAGGCGTGGGAGGAGCTTAACCCGCCGGTTAAGAA-GAAGCAG---AGCGATG 1146
Query 1079 GCAAAGAAGTCAAGGCCAAGTGA 1101
||||||| |||||||||||||||
Sbjct 1147 GCAAAGATGTCAAGGCCAAGTGA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53965585875
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5