BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333172
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
AT5G44620.1 | Symbols: CYP706A3 | cytochrome P450, family 706, ... 1694 0.0
AT4G12330.1 | Symbols: CYP706A7 | cytochrome P450, family 706, ... 636 0.0
> AT5G44620.1 | Symbols: CYP706A3 | cytochrome P450, family 706,
subfamily A, polypeptide 3 | chr5:17997779-17999558 REVERSE
LENGTH=1708
Length=1708
Score = 1694 bits (917), Expect = 0.0
Identities = 1078/1154 (93%), Gaps = 17/1154 (1%)
Strand=Plus/Plus
Query 138 CCAATACTGGCGGATGCTGAGGAAACTATGTGTTAATAGGATACTGAGCAAA-GCCATGT 196
|||| | ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||
Sbjct 425 CCAA-AGTGGCGGATGCTGAGGAAGCTATGTGTTAATAGGATACTGAG-AAACGCCATGT 482
Query 197 TGGATTCCTCCACTGAACTCCGTCGACAAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 256
|||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 483 TGGATTCCTCCACTGACCTCCGTCGCCGAGAGACTCGGCAAACCGTCCGGTATTTGGCGG 542
Query 257 ACCAGGCTCGGGTCGGTTCGCCGGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 316
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 543 ACCAGGCTCGGGTCGGTTCACCAGTTAACCTGGGAGAACAAATATTCTTGATGATGTTGA 602
Query 317 ATGTTATTACGCAGATGCTATGGGGCACAACGGTTAAGGAAGAAGAGAGGGATGTTGTTG 376
||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 603 ATGTTGTGACGCAGATGCTATGGGGAACAACGGTTAAGGAAGAAGAGAGGGAGGTTGTTG 662
Query 377 GGGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 436
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GAGCCGAGTTCTTAGAGGTGATTAGAGAGATGAACGACCTCCTGCTAGTGCCCAATATCT 722
Query 437 CCGACTTTTTTCCGGTTTTGAGCCGGTTTGATCTTCAGGGTTTGGTTAAGCGTATGCAAA 496
|||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 723 CCGACTTTTTCCCGGTATTGAGCCGGTTTGATCTTCAGGGTTTGGCTAAGCGTATGCGAA 782
Query 497 GACCGGCTCAAAGGATGGATCAGATGTTTGACCGGATCATCAACCAACGGCTGGGGAAGG 556
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||| ||
Sbjct 783 GACCGGCTCAAAGAATGGATCAGATGTTCGACCGGATCATTAACCAACGGTTGGGGATGG 842
Query 557 ATAGGGACAGTAGTGATGGGAGAGCTGGGGATTTTCTTGATGTCTTGTTGAAAGTTAAGG 616
|||||||||||||||| |||||||||| ||||||||| || |||||||||||||| ||||
Sbjct 843 ATAGGGACAGTAGTGACGGGAGAGCTGTGGATTTTCTAGACGTCTTGTTGAAAGTCAAGG 902
Query 617 ATGAAGAAAATGAAAAGACGAATTTGACCATGAACGATGTCAAGGCCGTGCTCATGGACA 676
|||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 903 ATGAAGAAGCTGAAAAGACGAAGTTGACCATGAACGATGTCAAGGCCGTACTCATGGACA 962
Query 677 TGGTGCTCGGTGGTACAGACACATCACTGCACGTTATAGAATTCGCGATGGCCGAGTTAT 736
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 963 TGGTGCTCGGTGGTACAGACACATCACTGCACGTAATAGAATTCGCGATGGCCGAGCTAT 1022
Query 737 TACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAAGTTGTGGGCAAAG 796
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1023 TACACAACCCCGATATCATGAAGAGAGCTCAACAAGAGGTTGACAAAGTTGTGGGAAAAG 1082
Query 797 AAAAAGTTGTGGACGAATCTCACATCTCTAAACTTCCATACATTCTTGCCATTATGAAAG 856
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1083 AAAAAGTTGTGGAAGAATCTCACATCTCTAAACTTCCATACATTCTCGCCATTATGAAAG 1142
Query 857 AAACTCTAAGGCTTCACACGATTATTCCACTCCTTGTTCCTCGCCGACCGTCAAAAACCA 916
|||||||||||||||||||| || |||||||||||||||||| || |||||| ||||||
Sbjct 1143 AAACTCTAAGGCTTCACACGGTTGCTCCACTCCTTGTTCCTCGGCGCCCGTCACAAACCA 1202
Query 917 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAATGTGTGGGCGA 976
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 1203 CCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAACGCGTGGGCAA 1262
Query 977 TCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCCGACAGGTTTCTTG 1036
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1263 TCCATAGGAACCCGAATGTATGGGAGAATCCACTGAAGTTTGATCCCGACAGGTTTCTGG 1322
Query 1037 ATAAT-TCTTATGACTTCAAGGGAAATGACTTCAACTATTTACCGTTTGG---------- 1085
||| | |||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 1323 ATA-TGTCTTATGACTTCAAAGGAAATGACTTCAATTATCTACCGTTTGGGTCTGGTCGT 1381
Query 1086 A--ATATGTGTGGGAATGGCCATGGGCGAGAGGGTAGTTCTTTACAATCTCGCTACGTTT 1143
| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1382 AGGATATGCGTGGGAATGGCTATGGGCGAGAGGGTTGTTCTTTACAATCTCGCTACGTTT 1441
Query 1144 TTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTGGAGGAGAAGTTT 1203
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1442 TTGCATTCTTTTGATTGGAAAATTCCGCAAGGAGAGAGAGTGGAGGTCGAGGAGAAGTTT 1501
Query 1204 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCGCGCCCGTACTAAGGTTGTCCGAT 1263
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1502 GGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCACGCCCGTTCTAAGGTTGTCCGAT 1561
Query 1264 CCAAATCTTTATCT 1277
||||||||||||||
Sbjct 1562 CCAAATCTTTATCT 1575
Score = 147 bits (79), Expect = 4e-34
Identities = 95/103 (92%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 2 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTGGCAATTGTGG 61
||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 237 TGGCTAAAAAGCACGGTCCCATTTTCAAACTCTGGCTCGGGGCCAAGCTCACAATCGTGG 296
Query 62 TCACATCTTCTGAAGTAGCCCAAGAGATTTTTAAAACAAATGA 104
|||| |||||||||||||| ||||||||| | ||||| |||||
Sbjct 297 TCACCTCTTCTGAAGTAGCGCAAGAGATTCTCAAAACGAATGA 339
> AT4G12330.1 | Symbols: CYP706A7 | cytochrome P450, family 706,
subfamily A, polypeptide 7 | chr4:7317560-7319739 REVERSE
LENGTH=1854
Length=1854
Score = 636 bits (344), Expect = 0.0
Identities = 863/1106 (78%), Gaps = 66/1106 (6%)
Strand=Plus/Plus
Query 213 ACTCCGTCGACAAGAGACTC-GGCAAACCGTCCGGTATTTGGCGGACCAGGCTCGGGTC- 270
||| || || || ||||| | ||| ||| |||||||||||||| |||| |||||||| |
Sbjct 567 ACTTCGCCGCCAGGAGAC-CAGGCGAACAGTCCGGTATTTGGCAGACCGGGCTCGGGCCG 625
Query 271 GGTTCGCCGGTTAACCTGGGAGAACAAATATTCT-TGATGATGTTGAATGTTATTACGCA 329
|||| | |||||||| | |||||||||||||| | | | ||| || ||||| | || ||
Sbjct 626 GGTT-GGCGGTTAACGTTGGAGAACAAATATT-TGTCACGATATTAAATGTGGTGACTCA 683
Query 330 GATGCTATGGGGCA-CAACGGTTAAGGA--A-GAAGAGAGGGATG-TTGTTGGGGCCGAG 384
|||| | ||||| | ||| ||| ||| | || ||||| || | ||||| || ||
Sbjct 684 GATGTTGTGGGG-AGAAACTGTTGCGGACGACGAGGAGAGAGA-GAAAGTTGGAGCTGAA 741
Query 385 TTCTTAGAGGTGATTA-GAGAGATGAA-CGACCTCCTGCTAGTGCCCAATATCTCCGACT 442
|| || || |||||| | || || || || | || | ||| ||| |||| || |
Sbjct 742 TTTTTGGAATTGATTACG-GAAAT-AATTGATGTTGTGGGAAAGCCAAATGTCTCTGA-T 798
Query 443 TTTTT-CCGGTTTTGAGCCGGTTTGATCTTCAGGGTTTGGTTAAGCGTATGCAAAGACCG 501
||||| |||||||||||||||||||| ||||||||||||| ||||||| ||| ||| ||
Sbjct 799 TTTTTCCCGGTTTTGAGCCGGTTTGACCTTCAGGGTTTGGCTAAGCGTGTGCGTAGATCG 858
Query 502 GCTCAAAGGATGGATCAGATGTTTGACCGGATCATCAA-CCAACGGCTGGGGAA-GGAT- 558
||||| |||||||| | |||||| |||||||| || || |||||| | ||||| ||||
Sbjct 859 GCTCAGAGGATGGACCGGATGTTCGACCGGATTAT-AAGTCAACGGAT-GGGAATGGATA 916
Query 559 AGGGACAGTAGTGATGGGAGA-GCTGGGGATTTTCTTGAT-GTCTTGTTGAAAGTTAAGG 616
||||| |||| | |||| | | ||| |||||| ||||| || |||||||| | |||||
Sbjct 917 AGGGA-AGTA---AAGGGA-ACGGTGGAGATTTT-TTGATGGTTTTGTTGAATGCTAAGG 970
Query 617 ATGAAGAAAATGAAAAGACGAATTTGACCATGAACGATGTCAAGGCCGTGCTCATGGACA 676
|||||| ||| ||| || | || |||||||| ||||||||||| |||| ||||| |
Sbjct 971 ATGAAG---ATG-AAA-AC--A--TGTCCATGAACCATGTCAAGGCCTTGCTAATGGATA 1021
Query 677 TGGTGCTCGGTGGTACAGACACATCACTGCACGTTATAGAATTCGCGATGGCCGAG-TTA 735
||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||| |||
Sbjct 1022 TGGTGCTTGGTGGTACAGACACATCTTTGAACACAATAGAGTTCGCAATGGCAGAGCTTA 1081
Query 736 TTACACAACCCGGATATCATGAAGAGAGCTCAACAAGAGCTTGACAAAGTTGTGGGCAAA 795
|| |||| | ||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1082 -TAAACAAACTGGAGATCATGAAGAGAGCTCAACAAGAGCTTGACAAGGTTGTGGGGAAA 1140
Query 796 GAAAAAGTT-GTGGACGAATCTCACATCTCTAAACTTCCATACATTCT-TGCCATTATGA 853
|| || | || || ||| || ||| ||||||||||||||||||| | |||||||||
Sbjct 1141 -AACAACATCGTCGAAGAAAAACATATCACTAAACTTCCATACATTCTCT-CCATTATGA 1198
Query 854 AAGAAACTCTAAGGCTTCACAC-GATTATTCCACTCCTTGTTCCTCGCCGACCGTCAAAA 912
||||||| |||||||||||| | | | |||| || || | |||||| | || || ||
Sbjct 1199 AAGAAACCCTAAGGCTTCACCCAGCTC-TTCCTCTTCTAATACCTCGCTGCCCATCTGAA 1257
Query 913 ACCACCGTGGTGGGCGGCTTCACCATCCCTAAAGATTCAAAGATTTTCATCAATGTGTGG 972
||||| || | || |||| ||| || ||||| ||||| ||| |||||||||||||||||
Sbjct 1258 ACCACGGTTATAGGTGGCTACACAATTCCTAATGATTCTAAGGTTTTCATCAATGTGTGG 1317
Query 973 GCGATCCATAGGAACCCCAATGTATGGGAGAATCCACTAAAGTTTGATCCCGACAGGTTT 1032
||||| ||||| || || || |||||||||||||| | ||||| |||| || ||||||
Sbjct 1318 GCGATTCATAGAAATCCGAACGTATGGGAGAATCCGTTGGAGTTTAATCCTGATAGGTTT 1377
Query 1033 CTTGATAATTCTTATGACTTCAAG-GGAAATGACT-TCAACTATTTACCGTTTGGAA-T- 1088
|||||||| ||| ||||| | | || ||||||| | | ||||| ||||||||| |
Sbjct 1378 CTTGATAAAGGTTACGACTTTA-GTGGTAATGACTAT-AGTTATTTCCCGTTTGGATCTG 1435
Query 1089 -----A---TGTGTG-GG-AATGGCCATGGGCGAGAGGGTAGTTCTTTACAATCTCGCTA 1138
| | |||| || ||||||||||| ||||| || |||||||||||||| || |
Sbjct 1436 GCCGGAGAATTTGTGCGGGAATGGCCATGGCCGAGAAAGTTGTTCTTTACAATCTTGCAA 1495
Query 1139 CGTTTTTGCATTCTTTTGATTGGAAAATTCCACAAGGAGAGAGAGTGGAGGTGGAGGAGA 1198
|| ||||||||||||||||||||| |||| ||||||||| ||||||| | |||||||
Sbjct 1496 CGCTTTTGCATTCTTTTGATTGGAGAATTGGGGAAGGAGAGAAAGTGGAGCTCGAGGAGA 1555
Query 1199 AGTTTGGGATCGTGTTGGAGCTAAAGAATCCACTTGTTGCCGCGCCCGTACTAAGGTTGT 1258
|||||||||| | ||| || | ||||||||||||||||| | ||||| ||||| ||||
Sbjct 1556 AGTTTGGGATTTTATTGAAGTTGAAGAATCCACTTGTTGCAACACCCGTGCTAAGATTGT 1615
Query 1259 CCGATCCAAATCTTTATCTTTA-CAG 1283
| |||||||| |||| |||||| |||
Sbjct 1616 CGGATCCAAACCTTTTTCTTTAACAG 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63453488880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5