BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg333194
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82, su... 1345 0.0
> AT3G25180.1 | Symbols: CYP82G1 | cytochrome P450, family 82,
subfamily G, polypeptide 1 | chr3:9167285-9169282 REVERSE LENGTH=1718
Length=1718
Score = 1345 bits (728), Expect = 0.0
Identities = 840/895 (94%), Gaps = 4/895 (0%)
Strand=Plus/Plus
Query 558 GCACTGCGAGTACTTGGCCGTGATTCCTATGATAGGCGACGTTATTCCATGGCTGGGATG 617
||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 666 GCATTGCGAGTACTTGGCTGTGATTCCTATGATAGGCGACGTTATTCCATGGTTGGGATG 725
Query 618 GTTGGATTTTGCAAAAATTTCTCAAATGAAGAGATTATTTATGGAGCTTGACTCAGTCAA 677
||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||
Sbjct 726 GTTGGATTTTGCAAAAAATTCTCAAATGAAGAGACTATTTAAGGAGCTTGACTCAGTCAA 785
Query 678 CACCAAGTGGCTCCAAGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAAG 737
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CACCAAGTGGCTCCACGAACATCTCAAGAAGAGATCAAGAAATGAGAAGGATCAAGAAAG 845
Query 738 AACAATCATGGATCTACTACTCGACATCTTACCAGAAGATATTGTGATAAGTGGACATGT 797
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||| ||
Sbjct 846 AACAATCATGGATCTACTGCTAGACATCTTACCAGAGGATATTGTGATAAGTGGACACGT 905
Query 798 ACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACGGGATCAGACAGCAC 857
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 906 ACGCGATGTCATTGTGAAGGCAACAATTTTGGCTCTCACATTAACAGGATCAGACAGCAC 965
Query 858 ATCCATCACTTTGACATGGGCAGTATCGCTACTACTCAACAATCCTGCTACTTTAAAAGC 917
||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||| ||||
Sbjct 966 ATCCATCACTTTGACATGGGCGGTATCGCTGCTACTCAACAATCCAGCTGCTTTAGAAGC 1025
Query 918 AGCACAAGAAGAAATTGACAATTGTGTCGGGAAAGGTAGATGGGTTGAAGAATCCGACT- 976
|||||||||||| ||||| ||| ||||||| |||||||||||| ||||||||||||| |
Sbjct 1026 AGCACAAGAAGAGATTGATAATAGTGTCGGCAAAGGTAGATGGATTGAAGAATCCGA-TA 1084
Query 977 TACAAAACCTTAAGTACCTACAAGCTATTGTTAAGGAAACTCACCGACTTTACCCGCCCG 1036
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1085 TACAAAACCTCAAGTACCTACAAGCTATTGTTAAGGAAACGCACCGACTTTACCCGCCGG 1144
Query 1037 CTCCTCTTACAGGAATCCGTGAAGCACGGGAAGATTGTTTCGTGGGAGGATACCGTGTTA 1096
||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1145 CTCCTCTAACAGGAATCCGCGAAGCACGTGAAGATTGTTTCGTGGGAGGATACCGTGTTG 1204
Query 1097 AGAAAGGCACACGCTTGCTCGCCAACATTTGGAAACTTCATAGGGATCCCAAGATCTGGC 1156
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1205 AGAAAGGCACACGCTTGCTCGTAAACATATGGAAACTTCATAGGGATCCCAAGATCTGGC 1264
Query 1157 CTGACCCCCAAGCCTTTGAGCCTGAGAGGTTCATGGAGGAGAAATCACAATGTGAAAAGA 1216
|||||||| || ||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1265 CTGACCCCAAAACCTTTAAGCCTGAGAGGTTCATGGAGGATAAATCACAATGTGAAAAGA 1324
Query 1217 GCGACTTTGGATACATTCCTTTCGGTTCGGGAAGAAGGTCGTGTCCGGGGGTCAATCTTG 1276
|| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1325 GCAACTTTGAATACATTCCTTTCGGTTCGGGAAGGAGGTCGTGTCCGGGAGTCAATCTTG 1384
Query 1277 GTCTAAGAGTTGTACACTTCGTGTTGGCTCGAATGCTTCAAGGCTTTGAGTTACGCAAAG 1336
||||||||||||||||||| || |||||| || |||||||||| |||||||||| |||||
Sbjct 1385 GTCTAAGAGTTGTACACTTTGTATTGGCTAGATTGCTTCAAGGGTTTGAGTTACACAAAG 1444
Query 1337 TGTCTGATGAACCAGTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAACC 1396
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 TGTCTGATGAACCACTGGATATGGCTGAAGGGCCTGGTTTAGCCTTGCCAAAGATTAACC 1504
Query 1397 CGGTCGAAGTTGTTGTAATGCCTCGACTCGAACCGGAA-TTGTATAGTTCACTCT 1450
|||||||||| |||||||||||||| ||||| ||| || |||||||||| |||||
Sbjct 1505 CGGTCGAAGTAGTTGTAATGCCTCGGCTCGACCCG-AAGTTGTATAGTTTACTCT 1558
Score = 793 bits (429), Expect = 0.0
Identities = 505/541 (93%), Gaps = 8/541 (1%)
Strand=Plus/Plus
Query 8 TTT-TCTTTAGTACTCTCCAATTTTCTCTCTTCTCTTTGGCCCTTGTAATCGCCGGTTAC 66
||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 19 TTTCTCTTTAGTACTCTCCAGTTGTCTCTCTTCTCTTTGGCCCTTGTAATCTTTGGTTAC 78
Query 67 ATTTTCCTCGGaaaaaaaTTGAGTAAAGGTGAAGTTGATAGCTCCACCATCCCTGAGCCA 126
||||||||| ||||| ||||||||| | ||||||||||||||||||| || |||||||||
Sbjct 79 ATTTTCCTCAGAAAACAATTGAGTAGATGTGAAGTTGATAGCTCCACGATTCCTGAGCCA 138
Query 127 TTAGAAGCTTTGCCTCTATTCGGCCACCTCCATCTATTGCGCGGCAAAGAAC-CCATTTG 185
|| | |||||||||||||||||| ||||||||||| ||||| |||||| ||| || ||||
Sbjct 139 TTGGGAGCTTTGCCTCTATTCGGACACCTCCATCTTTTGCGTGGCAAAAAACTCC-TTTG 197
Query 186 CAAGAAACTAGCTGCCATGTCCGAAAAACATGGTCCTATCTTCTCCCTCAAGTTAGGGTT 245
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 198 CAAGAAATTAGCTGCCATGTCCCAAAAACATGGTCCTATCTTCTCCCTCAAGTTAGGGTT 257
Query 246 TTATAGGCTGGTTTTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCAACAACGA 305
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 258 TTATAGGCTGGTTGTAGCCAGCGACCCAAAAACGGTGAAAGATTGTTTCACCACCAACGA 317
Query 306 CATGGCT-CTAGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTAGGCTGCTACAACA 364
| ||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 318 CTTGGCTAC-AGCAACCAGACCCAATATAGCCTTTGGTCGGTACGTA-G--GCTACAACA 373
Query 365 ATGCAAGTCTAACACTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTGCCA 424
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 374 ATGCAAGTCTGACTCTGGCTCCCTATGGAGACTATTGGCGTGAGTTACGTAAGATTGTCA 433
Query 425 CCGTCCATCTATTCTCAAACCAGAGTATAGAGATGCTTGGTCACATTCGTTCTTCAGAAG 484
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 434 CCGTCCATCTATTCTCAAACCACAGTATAGAGATGCTTGGTCACATTCGTTCTTCAGAAG 493
Query 485 TAAACACGTTGATCAAACACCTATACAAAGGGAGTGGTGGAACTTCTATAGTAAAGATTG 544
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 494 TAAACACGTTGATCAAACACCTATACAAAGGGAATGGTGGAACTTCTATAGTGAAGATTG 553
Query 545 A 545
|
Sbjct 554 A 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5